YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229897845, gi...
Organism:	Yersinia pestis biovar Orientalis str. India 195
Length:	457 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229897845, gi....

Description	E-value	Query Range	Subject Range
gi\|68373624 - gi\|68373624\|ref\|XP_692242.1\| PREDICTED: similar to Cationic amino acid transporter 3 (CAT-3) (Solute...	6.0E-71	[1..393]	[964..1384]
gi\|39943728, gi\|... - gi\|39943728\|ref\|XP_361401.1\| hypothetical protein MG03875.4 [Magnaporthe grisea 70-15], gb\|EAA50116....	2.0E-68	[8..450]	[39..511]
gi\|42548077, gi\|... - gi\|46115934\|ref\|XP_383985.1\| hypothetical protein FG03809.1 [Gibberella zeae PH-1], gi\|42548077\|gb\|E...	1.0E-66	[1..450]	[1089..1543]
gi\|50292087, gi\|... - gi\|50292087\|ref\|XP_448476.1\| unnamed protein product [Candida glabrata], gi\|49527788\|emb\|CAG61437.1\|... gi\|49527788 - gi\|49527788\|emb\|CAG61437.1\| unnamed protein product [Candida glabrata]	2.0E-64	[6..456]	[138..618]
GNP1_YEAST - High-affinity glutamine permease OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=GNP1 PE... GNP1 - High-affinity glutamine permease, also transports Leu, Ser, Thr, Cys, Met and Asn; expression is ful...	4.0E-64	[2..454]	[137..619]
orf19.3195 - HIP1 CGDID:CAL0002448 Assembly 19, Contig19-10170 (67622, 69421) CDS, translated using codon table 1... gi\|46436194, gi\|... - gi\|68482961\|ref\|XP_714611.1\| potential general amino acid permease [Candida albicans SC5314], gi\|464...	5.0E-64	[6..455]	[85..556]

Back

Predicted Domain #1

Region A:
Residues: [1-457]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEQQLQNSSL KRGLKNRHIQ LIALGGAIGT GLFLGIAQTI NMAGPSVILG YAIGGFIAFL  60
   61 IMRQLGEMVV EEPVAGSFSH FAYKYWGDFA GFLSGWNYWA MFILVGMAEL TAVGIYIQYW 120
  121 WPEIPTWVSA AVFFIIINAI NLVNVRLYGE TEFWFAIIKV AAIIGMIVFG AYLLASGSGG 180
  181 PAASVTNLWA QGGFMPHGFR GLIMAMAVIM FSFGGLEMVG ITAAEAEDPR NSIPKATNQV 240
  241 VYRILIFYIG SLTVLLSLFP WNNVVEGGSP FVMIFDALDS PWVATALNVV VLTAALSVYN 300
  301 SGVYCNSRML FGLASQGNAP KLLTKLNKRG VPIRSIALSA LATSAGVVIN YIMPGKAFEL 360
  361 LMALVVSTLV INWVMICLAH LKFRKAKVKE GVVPRFKALW YPYGNYLCLV FLALILVIMY 420
  421 LTEGIRISVL MMPVWIALLW CGFVLTRRKC PKTVTSL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.2
Match:	2a65A
Description:	Crystal structure of LEUTAA, a bacterial homolog of Na+/Cl--dependent neurotransmitter transporters
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits