YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|238903056, gi...
Organism:	Escherichia coli BW2952
Length:	196 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|238903056, gi....

Description	E-value	Query Range	Subject Range
gi\|82778825, gi\|... - gi\|82778825\|ref\|YP_405174.1\| hypothetical protein SDY_3727 [Shigella dysenteriae Sd197], gi\|81242973...	330.0	[0..1]	[196..1]
gi\|187730832, gi... - gi\|75179640\|ref\|ZP_00699644.1\| COG3068: Uncharacterized protein conserved in bacteria [Shigella boyd...	330.0	[0..1]	[196..1]
gi\|191168651, gi... - gi\|75228130\|ref\|ZP_00714799.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c...	329.0	[0..1]	[196..1]
gi\|218434715, gi... - gi\|218707618\|ref\|YP_002415137.1\| hypothetical protein ECUMN_4523 [Escherichia coli UMN026], gi\|21843... gi\|191174295, gi... - gi\|75236729\|ref\|ZP_00720802.1\| COG3068: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|110644334, gi... - gi\|110644334\|ref\|YP_672064.1\| hypothetical protein ECP_4212 [Escherichia coli 536], gi\|110345926\|gb\|... gi\|115515385, gi... - gi\|117626261\|ref\|YP_859584.1\| hypothetical protein APECO1_2476 [Escherichia coli APEC O1], gi\|115515... gi\|26250770, gi\|... - gi\|26250770\|ref\|NP_756810.1\| hypothetical protein c4956 [Escherichia coli CFT073], gi\|26111201\|gb\|AA... gi\|215267403, gi... - gi\|215489331\|ref\|YP_002331762.1\| hypothetical protein E2348C_4306 [Escherichia coli O127:H6 str. E23... gi\|218561065, gi... - gi\|218561065\|ref\|YP_002393978.1\| hypothetical protein ECS88_4460 [Escherichia coli S88], gi\|21836783... gi\|226903079, gi... - gi\|237702766\|ref\|ZP_04533247.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22690... gi\|218692280, gi... - gi\|218692280\|ref\|YP_002400492.1\| hypothetical protein ECED1_4706 [Escherichia coli ED1a], gi\|2184298... gi\|227885471, gi... - gi\|227885471\|ref\|ZP_04003276.1\| conserved hypothetical protein [Escherichia coli 83972], gi\|22783754... gi\|218372620, gi... - gi\|218702634\|ref\|YP_002410263.1\| hypothetical protein ECIAI39_4389 [Escherichia coli IAI39], gi\|2183...	327.0	[0..1]	[196..1]
gi\|91212794, gi\|... - gi\|91212794\|ref\|YP_542780.1\| hypothetical protein UTI89_C3820 [Escherichia coli UTI89], gi\|91074368\|...	327.0	[0..1]	[196..1]
gi\|24054577, gi\|... - gi\|24115283\|ref\|NP_709793.1\| hypothetical protein SF4071 [Shigella flexneri 2a str. 301], gi\|2405457... gi\|30064719, gi\|... - gi\|30064719\|ref\|NP_838890.1\| hypothetical protein S3664 [Shigella flexneri 2a str. 2457T], gi\|300429...	327.0	[0..1]	[196..1]
gi\|82546341, gi\|... - gi\|82546341\|ref\|YP_410288.1\| hypothetical protein SBO_4020 [Shigella boydii Sb227], gi\|81247752\|gb\|A...	326.0	[0..1]	[196..1]
gi\|110807849, gi... - gi\|110807849\|ref\|YP_691369.1\| hypothetical protein SFV_4071 [Shigella flexneri 5 str. 8401], gi\|1106...	326.0	[0..1]	[196..1]
lcl\|NC_016856.1_... - [gene=yjaG] [protein=putative cytoplasmic protein] [protein_id=YP_005240451.1] [location=4399513..44... gi\|194408086, gi... - gi\|194449782\|ref\|YP_002048154.1\| hypothetical protein SeHA_C4500 [Salmonella enterica subsp. enteric... gi\|194444880, gi... - gi\|194444880\|ref\|YP_002043417.1\| hypothetical protein SNSL254_A4502 [Salmonella enterica subsp. ente... gi\|168823117, gi... - gi\|205340576\|gb\|EDZ27340.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205346986, gi... - gi\|205346986\|gb\|EDZ33617.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|197364922, gi... - gi\|197364922\|ref\|YP_002144559.1\| hypothetical protein SSPA3721 [Salmonella enterica subsp. enterica ... gi\|197243199, gi... - gi\|197264944\|ref\|ZP_03165018.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YJAG_SALTY - Uncharacterized protein yjaG OS=Salmonella typhimurium GN=yjaG PE=4 SV=1 gi\|62182620, gi\|... - gi\|62182620\|ref\|YP_219037.1\| hypothetical protein SC4050 [Salmonella enterica subsp. enterica serova... gi\|197212095, gi... - gi\|197248392\|ref\|YP_002149077.1\| hypothetical protein SeAg_B4413 [Salmonella enterica subsp. enteric... gi\|56130252, gi\|... - gi\|56415995\|ref\|YP_153070.1\| hypothetical protein SPA4006 [Salmonella enterica subsp. enterica serov... gi\|194458998, gi... - gi\|194472634\|ref\|ZP_03078618.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica ... YJAG_SALTI - Uncharacterized protein YjaG OS=Salmonella typhi GN=yjaG PE=4 SV=1 gi\|161617308, gi... - gi\|161617308\|ref\|YP_001591273.1\| hypothetical protein SPAB_05159 [Salmonella enterica subsp. enteric... YJAG_SALTY - Uncharacterized protein YjaG OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=yjaG... gi\|238913747 - gi\|238913747\|ref\|ZP_04657584.1\| hypothetical protein SentesTe_21808 [Salmonella enterica subsp. ente... YJAG_SALTI - Uncharacterized protein yjaG OS=Salmonella typhi GN=yjaG PE=4 SV=1 gi\|205336104, gi... - gi\|205336104\|gb\|EDZ22868.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|205331646, gi... - gi\|205331646\|gb\|EDZ18410.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|29139411, gi\|... - gi\|29143776\|ref\|NP_807118.1\| hypothetical protein t3462 [Salmonella enterica subsp. enterica serovar... gi\|205327256, gi... - gi\|205327256\|gb\|EDZ14020.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|16762288 - gi\|16762288\|ref\|NP_457905.1\| hypothetical protein STY3716 [Salmonella enterica subsp. enterica serov... gi\|205321822, gi... - gi\|205321822\|gb\|EDZ09661.1\| conserved hypothetical protein [Salmonella enterica subsp. enterica sero... gi\|224470237, gi... - gi\|224585709\|ref\|YP_002639508.1\| hypothetical protein SPC_4000 [Salmonella enterica subsp. enterica ... gi\|214001634 - gi\|214001634\|ref\|ZP_03412369.1\| hypothetical protein Salmonellentericaenterica_14717 [Salmonella ent... gi\|213975056 - gi\|213975056\|ref\|ZP_03402315.1\| hypothetical protein Salmonellaentericaenterica_11003 [Salmonella en... gi\|213051531 - gi\|213051531\|ref\|ZP_03344409.1\| hypothetical protein Salmoneentericaenterica_00490 [Salmonella enter... gi\|207859347, gi... - gi\|207859347\|ref\|YP_002245998.1\| hypothetical protein SEN3955 [Salmonella enterica subsp. enterica s... gi\|205354429, gi... - gi\|205354429\|ref\|YP_002228230.1\| hypothetical protein SG3437 [Salmonella enterica subsp. enterica se... YJAG_SALTY - Uncharacterized protein yjaG OS=Salmonella typhimurium GN=yjaG PE=4 SV=1 gi\|197938322, gi... - gi\|198243806\|ref\|YP_002218085.1\| hypothetical protein SeD_A4576 [Salmonella enterica subsp. enterica... gi\|213647193 - gi\|213647193\|ref\|ZP_03377246.1\| hypothetical protein SentesTy_07760 [Salmonella enterica subsp. ente... gi\|213609699 - gi\|213609699\|ref\|ZP_03369525.1\| hypothetical protein SentesTyp_03890 [Salmonella enterica subsp. ent... gi\|213428480 - gi\|213428480\|ref\|ZP_03361230.1\| hypothetical protein SentesTyphi_24870 [Salmonella enterica subsp. e... gi\|213420369 - gi\|213420369\|ref\|ZP_03353435.1\| hypothetical protein Salmonentericaenterica_22505 [Salmonella enteri...	326.0	[0..1]	[196..1]
gi\|168790359, gi... - gi\|189370158\|gb\|EDU88574.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189379085, gi... - gi\|189379085\|gb\|EDU97501.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|254595397, gi... - gi\|254795997\|ref\|YP_003080834.1\| hypothetical protein ECSP_5069 [Escherichia coli O157:H7 str. TW143... gi\|195939625 - gi\|195939625\|ref\|ZP_03085007.1\| hypothetical protein EscherichcoliO157_24982 [Escherichia coli O157:... gi\|208809527, gi... - gi\|208809527\|ref\|ZP_03251864.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|168764579, gi... - gi\|189365454\|gb\|EDU83870.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|168771471, gi... - gi\|189359747\|gb\|EDU78166.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|13364398, gi\|... - gi\|15834176\|ref\|NP_312949.1\| hypothetical protein ECs4922 [Escherichia coli O157:H7], gi\|13364398\|db... gi\|187767362, gi... - gi\|187767362\|gb\|EDU31206.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|209751692, gi... - pir\|\|H86091 hypothetical protein yjaG [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|189001673, gi... - gi\|189001673\|gb\|EDU70659.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|15804590, gi\|... - gi\|15804590\|ref\|NP_290631.1\| hypothetical protein Z5575 [Escherichia coli O157:H7 EDL933], gi\|125189... gi\|168752036, gi... - gi\|188014027\|gb\|EDU52149.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... gi\|168758605, gi... - gi\|189354603\|gb\|EDU73022.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|13364398, gi\|... - gi\|15834176\|ref\|NP_312949.1\| hypothetical protein ECs4922 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|208814451, gi... - gi\|208814451\|ref\|ZP_03255780.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|208740109, gi... - gi\|208819986\|ref\|ZP_03260306.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|209398075, gi... - gi\|209398075\|ref\|YP_002273515.1\| hypothetical protein ECH74115_5468 [Escherichia coli O157:H7 str. E... gi\|217324856, gi... - gi\|217324856\|ref\|ZP_03440940.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458...	323.0	[0..1]	[196..1]

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Predicted Domain #1

Region A:
Residues: [1-196]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQNPIHLRL ERLESWQHVT FMACLCERMY PNYAMFCQQT GFGDGQIYRR ILDLIWETLT  60
   61 VKDAKVNFDS QLEKFEEAIP SADDFDLYGV YPAIDACVAL SELVHSRLSG ETLEHAVEVS 120
  121 KTSITTVAML EMTQAGREMS DEELKENPAV EQEWDIQWEI FRLLAECEER DIELIKGLRA 180
  181 DLREAGESNI GIIFQQ

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.045757
Match:	2q9rA
Description:	No description for 2q9rA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits