YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|254936514
Organism:	Listeria monocytogenes F6900
Length:	371 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|254936514.

Description	E-value	Query Range	Subject Range
gi\|254931447 - gi\|254931447\|ref\|ZP_05264806.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes HPB2262] gi\|254993966 - gi\|254993966\|ref\|ZP_05276156.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J2-06... MNMA_LISMF - tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes serotype 4b (strain F2365) GN=mnmA PE=3... MNMA_LISMC - tRNA-specific 2-thiouridylase MnmA OS=Listeria monocytogenes serotype 4b (strain CLIP80459) GN=mnmA ... gi\|254852136 - gi\|254852136\|ref\|ZP_05241484.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL R2-50... gi\|254878999 - gi\|254878999\|ref\|ZP_05251709.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J2-07... gi\|153166945, gi... - gi\|153166945\|ref\|ZP_01927385.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Lister... MNMA_LISMC - tRNA-specific 2-thiouridylase mnmA OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=mnmA ... gi\|254824429 - gi\|254824429\|ref\|ZP_05229430.1\| tRNA-specific 2-thiouridylase MnmA [Listeria monocytogenes FSL J1-19...	424.0	[0..1]	[371..1]
TRMU_LISIN, MNMA... - Probable tRNA - Listeria innocua, tRNA-specific 2-thiouridylase mnmA OS=Listeria innocua GN=mnmA PE=... MNMA_LISIN - tRNA-specific 2-thiouridylase MnmA OS=Listeria innocua serovar 6a (strain CLIP 11262) GN=mnmA PE=3 S...	418.0	[0..1]	[371..1]
gi\|89100972, gi\|... - gi\|89100972\|ref\|ZP_01173817.1\| TrmU [Bacillus sp. NRRL B-14911], gi\|89084308\|gb\|EAR63464.1\| TrmU [Ba...	414.0	[0..1]	[371..1]
MNMA2_GEOKA - tRNA-specific 2-thiouridylase MnmA 2 OS=Geobacillus kaustophilus (strain HTA426) GN=mnmA2 PE=3 SV=1 MNMA2_GEOKA - tRNA-specific 2-thiouridylase mnmA 2 OS=Geobacillus kaustophilus GN=mnmA2 PE=3 SV=1	413.0	[0..1]	[371..1]
TRMU_OCEIH, MNMA... - Probable tRNA - Oceanobacillus iheyensis, tRNA-specific 2-thiouridylase mnmA OS=Oceanobacillus iheye... MNMA_OCEIH - tRNA-specific 2-thiouridylase MnmA OS=Oceanobacillus iheyensis (strain DSM 14371 / JCM 11309 / KCTC ...	407.0	[0..3]	[371..2]
MNMA_BACHD - tRNA-specific 2-thiouridylase MnmA OS=Bacillus halodurans (strain ATCC BAA-125 / DSM 18197 / FERM 73... TRMU_BACHD, MNMA... - Probable tRNA - Bacillus halodurans, tRNA-specific 2-thiouridylase mnmA OS=Bacillus halodurans GN=mn...	407.0	[0..3]	[362..4]
gi\|29898030, gi\|... - gi\|30022472\|ref\|NP_834103.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillus ... gi\|206735142, gi... - gi\|206969454\|ref\|ZP_03230408.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacill...	407.0	[0..1]	[371..2]
MNMA_BACCN - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cytotoxicus (strain DSM 22905 / CIP 110041 / 391-98 /...	406.0	[0..1]	[371..1]
gi\|254724677 - gi\|254724677\|ref\|ZP_05186460.1\| tRNA-specific 2-thiouridylase MnmA [Bacillus anthracis str. A1055] MNMA_BACHK - tRNA-specific 2-thiouridylase MnmA OS=Bacillus thuringiensis subsp. konkukian (strain 97-27) GN=mnmA... MNMA_BACHK, TRMU... - Probable tRNA - Bacillus thuringiensis subsp. konkukian, tRNA-specific 2-thiouridylase mnmA OS=Bacil... MNMA_BACCZ - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cereus (strain ZK / E33L) GN=mnmA PE=3 SV=1 gi\|47556614, gi\|... - gi\|47566584\|ref\|ZP_00237406.1\| tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase [Bacillu... MNMA_BACCQ - tRNA-specific 2-thiouridylase MnmA OS=Bacillus cereus (strain Q1) GN=mnmA PE=3 SV=1 MNMA_BACAH - tRNA-specific 2-thiouridylase MnmA OS=Bacillus thuringiensis (strain Al Hakam) GN=mnmA PE=3 SV=2	406.0	[0..1]	[371..1]

Back

Predicted Domain #1

Region A:
Residues: [1-371]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTNNSDIRV VVGMSGGVDS SVTAHILKEQ GYDVIGIFMK NWDDTDEFGV CTATEDYDDV  60
   61 IRVANQIGIP YYAVNFEKEY WDKVFTYFLD EYKLGRTPNP DVMCNKEIKF KAFLEHAESL 120
  121 GADYVATGHY AQVKKVGDEI ELLRGVDNNK DQTYFLNQLS QDQLKKVMFP LGAMEKTEVR 180
  181 EIAKKAGLAT ADKKDSTGIC FIGERNFKQF LSEYLPAQPG EMRTLDGEVL GKHDGLMYYT 240
  241 IGQRHGLGIG GDGEPWFVVG KDLKENVLFV EQGFHHETLY SDSLIATDIS FTTNAEKPKT 300
  301 IECTAKFRYR QTDTKVTVHL REDGTAEVVF ADPVRAITPG QAVVFYDGDV CLGGGTIDTV 360
  361 WKNGQKLDYV G

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	107.0
Match:	2hmaA
Description:	No description for 2hmaA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits