YRC Public Data Repository - Protein Structure Prediction

Protein:	RL21_VIBCM
Organism:	Vibrio cholerae M66-2
Length:	103 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL21_VIBCM.

Description	E-value	Query Range	Subject Range
gi\|5712722 - gi\|5712722\|gb\|AAD47625.1\| unknown [Pseudomonas sp. BG33R]	157.0	[0..2]	[103..103]
gi\|71735895, gi\|... - gi\|71735895\|ref\|YP_273005.1\| ribosomal protein L21 [Pseudomonas syringae pv. phaseolicola 1448A], gi...	153.0	[0..1]	[103..50]
gi\|84691601, gi\|... - gi\|84702355\|ref\|ZP_01016930.1\| LSU ribosomal protein L21P [Parvularcula bermudensis HTCC2503], gi\|84...	147.0	[0..1]	[101..56]
gi\|26987424, gi\|... - gi\|26987424\|ref\|NP_742849.1\| 50S ribosomal protein L21 [Pseudomonas putida KT2440], gi\|24982083\|gb\|A...	147.0	[0..2]	[103..69]
RL21_THIDA - 50S ribosomal protein L21 OS=Thiobacillus denitrificans (strain ATCC 25259) GN=rplU PE=3 SV=1	143.0	[0..1]	[103..1]
RL21_DECAR - 50S ribosomal protein L21 OS=Dechloromonas aromatica (strain RCB) GN=rplU PE=3 SV=1	143.0	[0..1]	[103..1]
gi\|78220139, gi\|... - gi\|78357734\|ref\|YP_389183.1\| 50S ribosomal protein L21P [Desulfovibrio desulfuricans subsp. desulfur...	143.0	[0..1]	[103..48]
RL21_IDILO - 50S ribosomal protein L21 OS=Idiomarina loihiensis GN=rplU PE=3 SV=1 RL21_IDILO - 50S ribosomal protein L21 OS=Idiomarina loihiensis (strain ATCC BAA-735 / DSM 15497 / L2-TR) GN=rplU...	143.0	[0..1]	[103..1]
gi\|114328367, gi... - gi\|114328367\|ref\|YP_745524.1\| 50S ribosomal protein L21 [Granulibacter bethesdensis CGDNIH1], gi\|114...	141.0	[0..1]	[103..44]
gi\|90580808, gi\|... - gi\|90580808\|ref\|ZP_01236611.1\| 50S ribosomal protein L21 [Vibrio angustum S14], gi\|90438076\|gb\|EAS63... gi\|89048690, gi\|... - gi\|89075550\|ref\|ZP_01161955.1\| putative Ribosomal protein L21 [Photobacterium sp. SKA34], gi\|8904869...	141.0	[0..1]	[103..1]

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Predicted Domain #1

Region A:
Residues: [1-103]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYAVFQSGGK QHRVSEGQTL RLEKLDVETG ATVEFDKVLL VANGEDIKVG APLVEGGKVV  60
   61 AEVVQHGRGD KVKIVKFRRR KHSRKQQGHR QWFTEVKITG INA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.30103
Match:	1vs6R
Description:	No description for 1vs6R was found.

Predicted functions:

Term	Confidence	Notes
structural constituent of ribosome	9.85836545072418	bayes_pls_golite062009
structural molecule activity	9.28432670986445	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: