YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229343542, gi...
Organism:	Vibrio cholerae RC9
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229343542, gi....

Description	E-value	Query Range	Subject Range
gi\|229332894, gi... - gi\|229529120\|ref\|ZP_04418510.1\| primosomal replication protein N prime prime [Vibrio cholerae 12129(... gi\|254286784, gi... - gi\|254286784\|ref\|ZP_04961738.1\| primosomal replication protein N`` [Vibrio cholerae AM-19226], gi\|19... gi\|153825184, gi... - gi\|153825184\|ref\|ZP_01977851.1\| primosomal replication protein N`` [Vibrio cholerae MZO-2], gi\|14974... gi\|75814261, gi\|... - gi\|75814261\|ref\|ZP_00744876.1\| COG3923: Primosomal replication protein N'' [Vibrio cholerae V52], gi... gi\|227081986, gi... - gi\|227081986\|ref\|YP_002810537.1\| primosomal replication protein N'' [Vibrio cholerae M66-2], gi\|2270... gi\|146316622, gi... - gi\|75827182\|ref\|ZP_00756617.1\| COG3923: Primosomal replication protein N'' [Vibrio cholerae O395], g... gi\|126509340, gi... - gi\|153820122\|ref\|ZP_01972789.1\| primosomal replication protein N`` [Vibrio cholerae NCTC 8457], gi\|1... gi\|229523875, gi... - gi\|229523875\|ref\|ZP_04413280.1\| primosomal replication protein N prime prime [Vibrio cholerae bv. al... gi\|124118493, gi... - gi\|153222992\|ref\|ZP_01953582.1\| primosomal replication protein N`` [Vibrio cholerae MAK 757], gi\|124... gi\|229508046, gi... - gi\|229508046\|ref\|ZP_04397551.1\| primosomal replication protein N prime prime [Vibrio cholerae BX 330...	221.0	[0..1]	[187..1]
gi\|54308203, gi\|... - gi\|54308203\|ref\|YP_129223.1\| primosomal replication protein N`` [Photobacterium profundum SS9], gi\|4...	202.0	[0..6]	[185..1]
gi\|28805992 - gi\|28805992\|dbj\|BAC59268.1\| primosomal replication protein N'' [Vibrio parahaemolyticus RIMD 2210633... gi\|28805992, gi\|... - gi\|28897779\|ref\|NP_797384.1\| primosomal replication protein N'' [Vibrio parahaemolyticus RIMD 221063... gi\|149749346, gi... - gi\|153837315\|ref\|ZP_01989982.1\| primosomal replication protein N'' [Vibrio parahaemolyticus AQ3810],...	200.0	[0..9]	[185..3]
gi\|91225242, gi\|... - gi\|91225242\|ref\|ZP_01260410.1\| primosomal replication protein N'' [Vibrio alginolyticus 12G01], gi\|9...	196.0	[0..9]	[185..3]
gi\|116186142, gi... - gi\|75854387\|ref\|ZP_00762084.1\| COG3923: Primosomal replication protein N'' [Vibrio sp. Ex25], gi\|116...	196.0	[0..9]	[185..3]
gi\|90411557, gi\|... - gi\|90411557\|ref\|ZP_01219567.1\| hypothetical primosomal replication protein N'' [Photobacterium profu...	196.0	[0..6]	[185..1]
gi\|37680515, gi\|... - gi\|37680515\|ref\|NP_935124.1\| primosomal replication protein N'' [Vibrio vulnificus YJ016], gi\|371992...	185.0	[0..9]	[185..3]
gi\|27365444, gi\|... - gi\|27365444\|ref\|NP_760972.1\| primosomal replication protein N'' [Vibrio vulnificus CMCP6], gi\|273615...	184.0	[0..9]	[185..3]
gi\|24373382, gi\|... - gi\|24373382\|ref\|NP_717425.1\| primosomal replication protein n'', putative [Shewanella oneidensis MR-... SO1817 - primosomal replication protein n putative	174.0	[0..1]	[185..1]
gi\|36787138, gi\|... - gi\|37527703\|ref\|NP_931048.1\| primosomal replication factor N'' [Photorhabdus luminescens subsp. laum...	174.0	[0..3]	[184..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVGGMMESYS KFHTILNELK HSAAQFDRQR GEHHRPLFDE VLFHCHGKLL TPCVEEAHST  60
   61 LQALIREKES GRLTALRAEY LSERLLAQIA ALTRELSTQN VRRNEPKPHA YFKKPINELY 120
  121 QELAQHQDWE RRLMDLVRDK ALLLEQASAT EKAAAQQALL QSEQRLNRCR EAKIKIEKRI 180
  181 TTQERKA

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.75
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits