YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229371076, gi...
Organism:	Vibrio cholerae MJ-1236
Length:	264 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229371076, gi....

Description	E-value	Query Range	Subject Range
gi\|260896240\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus Peru-466] gi\|260899991\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus AQ4037] TRUA_VIBPA - tRNA pseudouridine synthase A OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) GN=tru... gi\|260878838\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus AN-5034] gi\|260365288\|ref... - tRNA pseudouridine synthase A [Vibrio parahaemolyticus K5030] TRUA_VIBPA - tRNA pseudouridine synthase A OS=Vibrio parahaemolyticus GN=truA PE=3 SV=1	383.0	[0..1]	[264..1]
gi\|151939062, gi... - gi\|75855869\|ref\|ZP_00763509.1\| COG0101: Pseudouridylate synthase [Vibrio sp. Ex25], gi\|254228474\|ref...	383.0	[0..1]	[264..1]
gi\|269966027\|ref... - tRNA pseudouridine synthase A [Vibrio alginolyticus 40B] gi\|91223605, gi\|... - gi\|91223605\|ref\|ZP_01258870.1\| tRNA pseudouridine synthase A [Vibrio alginolyticus 12G01], gi\|911916...	381.0	[0..1]	[264..1]
gi\|125621266, gi... - gi\|75818714\|ref\|ZP_00748844.1\| COG0101: Pseudouridylate synthase [Vibrio cholerae V51], gi\|254226230... gi\|150422233, gi... - gi\|254291873\|ref\|ZP_04962656.1\| tRNA pseudouridine synthase A [Vibrio cholerae AM-19226], gi\|1977508... gi\|153829544, gi... - gi\|153829544\|ref\|ZP_01982211.1\| tRNA pseudouridine synthase A [Vibrio cholerae 623-39], gi\|148875004... gi\|124114489, gi... - gi\|153216039\|ref\|ZP_01950244.1\| tRNA pseudouridine synthase A [Vibrio cholerae 1587], gi\|124114489\|g...	381.0	[0..1]	[264..1]
gi\|121728128, gi... - gi\|75816359\|ref\|ZP_00746832.1\| COG0101: Pseudouridylate synthase [Vibrio cholerae V52], gi\|121728128... gi\|229512439, gi... - gi\|229512439\|ref\|ZP_04401912.1\| tRNA pseudouridine synthase A [Vibrio cholerae TMA 21], gi\|229350520...	379.0	[0..1]	[264..1]
TRUA_VIBVU - tRNA pseudouridine synthase A OS=Vibrio vulnificus GN=truA PE=3 SV=1 TRUA_VIBVU - tRNA pseudouridine synthase A OS=Vibrio vulnificus (strain CMCP6) GN=truA PE=3 SV=1 TRUA_VIBVY - tRNA pseudouridine synthase A OS=Vibrio vulnificus (strain YJ016) GN=truA PE=3 SV=1	378.0	[0..1]	[264..1]
gi\|84375076, gi\|... - gi\|84394308\|ref\|ZP_00993032.1\| tRNA pseudouridine synthase A [Vibrio splendidus 12B01], gi\|84375076\|...	374.0	[0..1]	[264..1]
TRUA_VIBTL - tRNA pseudouridine synthase A OS=Vibrio tasmaniensis (strain LGP32) GN=truA PE=3 SV=1 gi\|86148380, gi\|... - gi\|86148380\|ref\|ZP_01066673.1\| tRNA pseudouridine synthase A [Vibrio sp. MED222], gi\|85833863\|gb\|EAQ...	373.0	[0..1]	[264..1]
TRUA_VIBFM - tRNA pseudouridine synthase A OS=Vibrio fischeri (strain MJ11) GN=truA PE=3 SV=1 TRUA_VIBF1 - tRNA pseudouridine synthase A OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=truA PE=3 SV=1	370.0	[0..1]	[262..1]
gi\|90440125, gi\|... - gi\|90579292\|ref\|ZP_01235102.1\| tRNA pseudouridine synthase A [Vibrio angustum S14], gi\|90440125\|gb\|E...	367.0	[0..1]	[261..1]

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Predicted Domain #1

Region A:
Residues: [1-264]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIALGIEYD GTHYYGWQRQ REVKSVQEAL EKALSKIANH PVEVQCAGRT DAGVHGTGQV  60
   61 VHFDTTAERQ MVAWTMGANA NLPKDIAVRW AMAVPDEFHA RFSATARRYR YVIYNHVYRP 120
  121 GILNSGVSHY HGELDVEKMQ QAGQYLLGEN DFTSFRAVHC QSRSPWRNVM HLNVTRHGRY 180
  181 VVIDIKANAF VHHMVRNITG SLIAVGRGEQ KPEWIQWLLA QKDRTLAAAT AKAEGLYLVS 240
  241 VDYPAHFGLP EMPIGPLFLP DNLN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2nqpA
Description:	No description for 2nqpA was found.

Predicted functions:

Term	Confidence	Notes
pseudouridine synthase activity	5.60483019625575	bayes_pls_golite062009
intramolecular transferase activity	4.62815459483632	bayes_pls_golite062009
isomerase activity	3.43067391737824	bayes_pls_golite062009
catalytic activity	2.39224964671205	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: