YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|251786341, gi...
Organism:	Escherichia coli BL21
Length:	337 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|251786341, gi....

Description	E-value	Query Range	Subject Range
gi\|59712856, gi\|... - gi\|59712856\|ref\|YP_205632.1\| peptidase [Vibrio fischeri ES114], gi\|59480957\|gb\|AAW86744.1\| predicted...	358.0	[0..1]	[336..1]
TSAD_PHOPR - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum (strain SS9) GN=tsaD PE=3... TSAD_PHOPR, GCP_... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Photobacterium profundum GN=tsaD PE=3 SV=1, Probab...	358.0	[0..1]	[336..1]
gi\|90327169, gi\|... - gi\|90411911\|ref\|ZP_01219919.1\| putative O-sialoglycoprotein endopeptidase [Photobacterium profundum ...	357.0	[0..1]	[336..1]
TSAD_ACTP2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 5b (strai... gi\|32035197 - gi\|32035197\|ref\|ZP_00135231.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... TSAD_ACTPJ - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 3 (strain... TSAD_ACTP7 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Actinobacillus pleuropneumoniae serotype 7 (strain...	353.0	[0..1]	[335..1]
tr\|D7HDL9\|D7HDL9... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae GN=tsaD PE=3 SV=1, tRNA N6-adenosi... gi\|229332108, gi... - gi\|229530335\|ref\|ZP_04419723.1\| endopeptidase [Vibrio cholerae 12129(1)], gi\|229332108\|gb\|EEN97596.1... gi\|150419451, gi... - gi\|75823731\|ref\|ZP_00753215.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|153214950, gi... - gi\|153214950\|ref\|ZP_01949733.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 1587], gi\|1241150...	352.0	[0..1]	[334..1]
TSAD_HISS2 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Histophilus somni (strain 2336) GN=tsaD PE=3 SV=1	352.0	[0..1]	[336..1]
TSAD_ECO81 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O81 (strain ED1a) GN=tsaD PE=3 SV... TSAD_ECO45 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=ts... TSAD_ECOL6 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 70092... TSAD_ECOUT - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=tsaD PE=... TSAD_ECOL5 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN... TSAD_ECOK1 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Escherichia coli O1:K1 / APEC GN=tsaD PE=3 SV=1 GCP_ECOL6 - Probable tRNA threonylcarbamoyladenosine biosynthesis protein Gcp OS=Escherichia coli O6 GN=gcp PE=3... gi\|75240475 - gi\|75240475\|ref\|ZP_00724403.1\| COG0533: Metal-dependent proteases with possible chaperone activity [... gi\|227835183, gi... - gi\|227887787\|ref\|ZP_04005592.1\| O-sialoglycoprotein endopeptidase [Escherichia coli 83972], gi\|22783... gi\|226899214, gi... - gi\|237706174\|ref\|ZP_04536655.1\| O-sialoglycoprotein endopeptidase [Escherichia sp. 3_2_53FAA], gi\|22...	352.0	[0..1]	[337..1]
gi\|23466489, gi\|... - gi\|23466489\|ref\|ZP_00122077.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	352.0	[0..1]	[336..1]
gi\|75815669 - gi\|75815669\|ref\|ZP_00746166.1\| COG0533: Metal-dependent proteases with possible chaperone activity [...	352.0	[0..1]	[334..2]
gi\|121590699, gi... - gi\|121590699\|ref\|ZP_01678032.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae 2740-80], gi\|1215... gi\|124117986, gi... - gi\|153223809\|ref\|ZP_01954064.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae MAK 757], gi\|1241... gi\|121629166, gi... - gi\|121728554\|ref\|ZP_01681576.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae V52], gi\|12162916... TSAD_VIBC3 - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / C... gi\|229509005, gi... - gi\|229509005\|ref\|ZP_04398493.1\| endopeptidase [Vibrio cholerae B33], gi\|229353930\|gb\|EEO18864.1\| end... gi\|153819118, gi... - gi\|153819118\|ref\|ZP_01971785.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae NCTC 8457], gi\|12... gi\|229355877, gi... - gi\|229507132\|ref\|ZP_04396638.1\| endopeptidase [Vibrio cholerae BX 330286], gi\|229355877\|gb\|EEO20797.... TSAD_VIBCM - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae serotype O1 (strain M66-2) GN=tsaD... gi\|229606189, gi... - gi\|229606189\|ref\|YP_002876837.1\| endopeptidase [Vibrio cholerae MJ-1236], gi\|229368844\|gb\|ACQ59267.1... tr\|C6YK27\|C6YK27... - tRNA N6-adenosine threonylcarbamoyltransferase OS=Vibrio cholerae MO10 GN=tsaD PE=3 SV=1 gi\|229519673, gi... - gi\|229519673\|ref\|ZP_04409116.1\| endopeptidase [Vibrio cholerae RC9], gi\|229344362\|gb\|EEO09337.1\| end... gi\|254850761, gi... - gi\|254850761\|ref\|ZP_05240111.1\| O-sialoglycoprotein endopeptidase [Vibrio cholerae MO10], gi\|2548464...	351.0	[0..1]	[334..1]

Back

Predicted Domain #1

Region A:
Residues: [1-337]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRVLGIETSC DETGIAIYDD EKGLLANQLY SQVKLHADYG GVVPELASRD HVRKTVPLIQ  60
   61 AALKESGLTA KDIDAVAYTA GPGLVGALLV GATVGRSLAF AWDVPAIPVH HMEGHLLAPM 120
  121 LEDNPPEFPF VALLVSGGHT QLISVTGIGQ YELLGESIDD AAGEAFDKTA KLLGLDYPGG 180
  181 PLLSKMAAQG TAGRFVFPRP MTDRPGLDFS FSGLKTFAAN TIRDNGTDDQ TRADIARAFE 240
  241 DAVVDTLMIK CKRALDQTGF KRLVMAGGVS ANRTLRAKLA EMMKKRRGEV FYARPEFCTD 300
  301 NGAMIAYAGM VRFKAGATAD LGVSVRPRWP LAELPAA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	68.0
Match:	2ivnA
Description:	No description for 2ivnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits