YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|226840291, gi...
Organism:	Escherichia sp. 1_1_43
Length:	316 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|226840291, gi....

Description	E-value	Query Range	Subject Range
MIAA_SHIB3 - tRNA dimethylallyltransferase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=miaA PE...	395.0	[0..1]	[316..1]
gi\|191165623, gi... - gi\|75231236\|ref\|ZP_00717643.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric...	393.0	[0..1]	[316..1]
gi\|24115526, gi\|... - gi\|24115526\|ref\|NP_710036.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella flexneri 2... gi\|30065543, gi\|... - gi\|30065543\|ref\|NP_839714.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Shigella flexneri 2... MIAA_SHIFL - tRNA dimethylallyltransferase OS=Shigella flexneri GN=miaA PE=3 SV=1	393.0	[0..1]	[316..1]
MIAA_SHIDS - tRNA dimethylallyltransferase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=miaA PE=3 SV=1	393.0	[0..1]	[316..1]
MIAA_ECOK1 - tRNA dimethylallyltransferase OS=Escherichia coli O1:K1 / APEC GN=miaA PE=3 SV=1 MIAA_ECOUT - tRNA dimethylallyltransferase OS=Escherichia coli (strain UTI89 / UPEC) GN=miaA PE=3 SV=1 gi\|226901750, gi... - gi\|237703838\|ref\|ZP_04534319.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia sp. ... MIAA_ECO45 - tRNA dimethylallyltransferase OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=miaA PE=3 SV=1	393.0	[0..1]	[316..1]
gi\|191174522, gi... - gi\|75236176\|ref\|ZP_00720298.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric... MIAA_ECOL6 - tRNA dimethylallyltransferase OS=Escherichia coli O6 GN=miaA PE=3 SV=1 MIAA_ECOL6 - tRNA dimethylallyltransferase OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=miaA... MIAA_ECO81 - tRNA dimethylallyltransferase OS=Escherichia coli O81 (strain ED1a) GN=miaA PE=3 SV=1 gi\|227836359, gi... - gi\|227886786\|ref\|ZP_04004591.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli...	392.0	[0..1]	[316..1]
gi\|188014483, gi... - gi\|188014483\|gb\|EDU52605.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... MIAA_ECO57 - tRNA dimethylallyltransferase OS=Escherichia coli O157:H7 GN=miaA PE=3 SV=1 gi\|12519156, gi\|... - gi\|15804760\|ref\|NP_290801.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O1... gi\|25324127, gi\|... - pir\|\|C86113 hypothetical protein miaA [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|254595590, gi... - gi\|254796190\|ref\|YP_003081027.1\| delta(2)-isopentenylpyrophosphate tRNA-adenosine transferase [Esche... gi\|217326156, gi... - gi\|217326156\|ref\|ZP_03442240.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli... gi\|15834401, gi\|... - gi\|15834401\|ref\|NP_313174.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O1... gi\|208726374, gi... - gi\|208806573\|ref\|ZP_03248910.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli... gi\|208812724, gi... - gi\|208812724\|ref\|ZP_03254053.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli... gi\|208819068, gi... - gi\|208819068\|ref\|ZP_03259388.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli... MIAA_ECO5E - tRNA dimethylallyltransferase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=miaA PE=3 SV=1 gi\|168780601, gi... - gi\|189001749\|gb\|EDU70735.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... gi\|168784806, gi... - gi\|189374757\|gb\|EDU93173.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... gi\|168801824, gi... - gi\|189376077\|gb\|EDU94493.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... gi\|195935961 - gi\|195935961\|ref\|ZP_03081343.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli... gi\|189357893, gi... - gi\|189357893\|gb\|EDU76312.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... gi\|168760410, gi... - gi\|189368991\|gb\|EDU87407.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... gi\|168766448, gi... - gi\|189364314\|gb\|EDU82733.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15... gi\|168774118, gi... - gi\|187770326\|gb\|EDU34170.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Escherichia coli O15...	391.0	[0..1]	[316..1]
gi\|194426673, gi... - gi\|75212280\|ref\|ZP_00712320.1\| COG0324: tRNA delta(2)-isopentenylpyrophosphate transferase [Escheric...	391.0	[0..1]	[316..1]
MIAA_ECOL5 - tRNA dimethylallyltransferase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=miaA PE=3 SV=1	390.0	[0..1]	[316..1]
MIAA_SALSV - tRNA dimethylallyltransferase OS=Salmonella schwarzengrund (strain CVM19633) GN=miaA PE=3 SV=1 gi\|194470981, gi... - gi\|194470981\|ref\|ZP_03076965.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enter... gi\|168464756, gi... - gi\|195632695\|gb\|EDX51149.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... gi\|205347915, gi... - gi\|205347915\|gb\|EDZ34546.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... MIAA_SALDC - tRNA dimethylallyltransferase OS=Salmonella dublin (strain CT_02021853) GN=miaA PE=3 SV=1 gi\|197265179, gi... - gi\|197265179\|ref\|ZP_03165253.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enter... MIAA_SALTY - tRNA dimethylallyltransferase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=mia... lcl\|NC_016856.1_... - [gene=miaA] [protein=tRNA delta(2)-isopentenylpyrophosphate transferase] [protein_id=YP_005240672.1]... gi\|197287603, gi... - gi\|197287603\|gb\|EDY26995.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... gi\|205334313, gi... - gi\|205334313\|gb\|EDZ21077.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... gi\|205327103, gi... - gi\|205327103\|gb\|EDZ13867.1\| tRNA delta(2)-isopentenylpyrophosphate transferase [Salmonella enterica ... MIAA_SALTY - tRNA delta(2)-isopentenylpyrophosphate transferase OS=Salmonella typhimurium GN=miaA PE=3 SV=2 MIAA_SALTY - tRNA dimethylallyltransferase OS=Salmonella typhimurium GN=miaA PE=3 SV=2	387.0	[0..1]	[315..1]

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Predicted Domain #1

Region A:
Residues: [1-316]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDISKASLP KAIFLMGPTA SGKTALAIEL RKILPVELIS VDSALIYKGM DIGTAKPNAE  60
   61 ELLAAPHRLL DIRDPSQAYS AADFRRDALA EMADITAAGR IPLLVGGTML YFKALLEGLS 120
  121 PLPSADPEVR ARIEQQAAEQ GWESLHRQLQ EVDPVAAARI HPNDPQRLSR ALEVFFISGK 180
  181 TLTELTQTSG DALPYQVHQF AIAPASRELL HQRIEQRFHQ MLASGFEAEV RALFARGDLH 240
  241 TDLPSIRCVG YRQMWSYLEG EISYDEMVYR GVCATRQLAK RQITWLRGWE GVHWLDSEKP 300
  301 EQARDEVLQV VGAIAG

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	98.522879
Match:	2qgnA
Description:	No description for 2qgnA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits