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View Structure Prediction Details

Protein: AGP18_ARATH
Organism: Arabidopsis thaliana
Length: 209 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for AGP18_ARATH.

Description E-value Query
Range
Subject
Range
gi|3511287, gi|7... - pir||T31670 DNA-directed RNA polymerase (EC 2.7.7.6) II largest chain - Mastigamoeba invertens (frag...
182.0 [0..9] [188..1506]

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Predicted Domain #1
Region A:
Residues: [1-83]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDRNFLLTVT LICIVVAGVG GQSPISSPTK SPTTPSAPTT SPTKSPAVTS PTTAPAKTPT  60
   61 ASASSPVESP KSPAPVSESS PPP

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.03
Match: 1pk8A
Description: Crystal Structure of Rat Synapsin I C Domain Complexed to Ca.ATP
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [84-209]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPVPESSPPV PAPMVSSPVS SPPVPAPVAD SPPAPVAAPV ADVPAPAPSK HKKTTKKSKK  60
   61 HQAAPAPAPE LLGPPAPPTE SPGPNSDAFS PGPSADDQSG AASTRVLRNV AVGAVATAWA 120
  121 VLVMAF

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 1.4
Match: 2j63A
Description: No description for 2j63A was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle