YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|18398425, gi\|...
Organism:	Arabidopsis thaliana
Length:	333 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18398425, gi|....

Description	E-value	Query Range	Subject Range
gi\|6478916 - gi\|6478916\|gb\|AAF14021.1\|AC011436_5 unknown protein [Arabidopsis thaliana]	294.0	[0..2]	[333..1]
gi\|54027090, gi\|... - gi\|54027090\|ref\|YP_121332.1\| transcription antitermination protein NusG [Nocardia farcinica IFM 1015...	237.0	[0..20]	[330..1]
gi\|125546265 - gi\|125546265\|gb\|EAY92404.1\| hypothetical protein OsI_14139 [Oryza sativa Indica Group] gi\|108711840, gi... - gi\|34897364\|ref\|NP_910028.1\| putative transcription factor [Oryza sativa], gi\|15042831\|gb\|AAK82454.1...	214.0	[0..30]	[330..34]
gi\|215402414 - gi\|215402414\|ref\|ZP_03414595.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|194543022, gi... - gi\|81255499\|ref\|ZP_00879975.1\| COG0250: Transcription antiterminator [Mycobacterium tuberculosis C],... gi\|119700503, gi... - gi\|76785663\|ref\|ZP_00772828.1\| COG0250: Transcription antiterminator [Mycobacterium tuberculosis F11... gi\|148660413, gi... - gi\|167969069\|ref\|ZP_02551346.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|254363593, gi... - gi\|254363593\|ref\|ZP_04979639.1\| transcription antitermination protein nusG [Mycobacterium tuberculos... gi\|121636560, gi... - gi\|121636560\|ref\|YP_976783.1\| transcription antitermination protein NusG [Mycobacterium bovis BCG st... gi\|255098156 - gi\|255098156\|ref\|ZP_05327634.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|254817182 - gi\|254817182\|ref\|ZP_05222183.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|254549599 - gi\|254549599\|ref\|ZP_05140046.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|253797579, gi... - gi\|253797579\|ref\|YP_003030580.1\| transcription antitermination protein nusG [Mycobacterium tuberculo... gi\|215410186 - gi\|215410186\|ref\|ZP_03418994.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|215429474 - gi\|215429474\|ref\|ZP_03427393.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|215444758 - gi\|215444758\|ref\|ZP_03431510.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... gi\|218752287 - gi\|218752287\|ref\|ZP_03531083.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... NUSG_MYCTU - Transcription termination/antitermination protein NusG OS=Mycobacterium tuberculosis (strain ATCC 25... gi\|219556483 - gi\|219556483\|ref\|ZP_03535559.1\| transcription antitermination protein NusG [Mycobacterium tuberculos... NUSG_MYCBO - Transcription antitermination protein nusG OS=Mycobacterium bovis GN=nusG PE=3 SV=1 NUSG_MYCBO - Transcription termination/antitermination protein NusG OS=Mycobacterium bovis (strain ATCC BAA-935 /... gi\|224989032, gi... - gi\|224989032\|ref\|YP_002643719.1\| transcription antitermination protein [Mycobacterium bovis BCG str.... NUSG_MYCTU - Transcription termination/antitermination protein NusG OS=Mycobacterium tuberculosis GN=nusG PE=1 SV... NUSG_MYCTO - Transcription termination/antitermination protein NusG OS=Mycobacterium tuberculosis (strain CDC 155...	208.0	[0..56]	[330..12]
gi\|89338459, gi\|... - gi\|89338459\|ref\|ZP_01191224.1\| transcription antitermination protein NusG:KOW [Mycobacterium flavesc...	207.0	[0..33]	[330..17]
gi\|124531368, gi... - gi\|124531368\|ref\|ZP_01701678.1\| NusG antitermination factor [Escherichia coli B], gi\|124498582\|gb\|EA... gi\|218358575, gi... - gi\|218551034\|ref\|YP_002384825.1\| transcription antitermination protein NusG [Escherichia fergusonii ... gi\|218363305, gi... - gi\|218556536\|ref\|YP_002389450.1\| transcription antitermination protein NusG [Escherichia coli IAI1],... gi\|218697689, gi... - gi\|218697689\|ref\|YP_002405356.1\| transcription antitermination protein NusG [Escherichia coli 55989]... gi\|218372598, gi... - gi\|218702612\|ref\|YP_002410241.1\| transcription antitermination protein NusG [Escherichia coli IAI39]... gi\|218707600, gi... - gi\|218707600\|ref\|YP_002415119.1\| transcription antitermination protein NusG [Escherichia coli UMN026... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|157069130, gi... - gi\|75197846\|ref\|ZP_00707916.1\| COG0250: Transcription antiterminator [Escherichia coli HS], gi\|15716... gi\|73857953, gi\|... - gi\|74314476\|ref\|YP_312895.1\| transcription antitermination protein NusG [Shigella sonnei Ss046], gi\|... gi\|157154871, gi... - gi\|75188712\|ref\|ZP_00701979.1\| COG0250: Transcription antiterminator [Escherichia coli E24377A], gi\|... gi\|89110057, gi\|... - gi\|89110057\|ref\|AP_003837.1\| transcription termination factor [Escherichia coli str. K-12 substr. W3... gi\|81242991, gi\|... - gi\|82778843\|ref\|YP_405192.1\| transcription antitermination protein NusG [Shigella dysenteriae Sd197]... gi\|254795980, gi... - gi\|254795980\|ref\|YP_003080817.1\| transcription termination factor [Escherichia coli O157:H7 str. TW1... gi\|81247735, gi\|... - gi\|82546324\|ref\|YP_410271.1\| transcription antitermination protein NusG [Shigella boydii Sb227], gi\|... gi\|254163923, gi... - gi\|254163923\|ref\|YP_003047031.1\| transcription antitermination protein NusG [Escherichia coli B str.... gi\|226838472, gi... - gi\|254039237\|ref\|ZP_04873286.1\| transcription termination/antitermination factor NusG [Escherichia s... gi\|254290673, gi... - gi\|254290673\|ref\|YP_003056421.1\| transcription antitermination protein NusG [Escherichia coli BL21(D... gi\|242379512, gi... - gi\|251787239\|ref\|YP_003001543.1\| hypothetical protein B21_03811 [Escherichia coli BL21], gi\|24237951... gi\|238903038, gi... - gi\|238903038\|ref\|YP_002928834.1\| transcription termination factor [Escherichia coli BW2952], gi\|2388... NUSG_SHIFL - Transcription termination/antitermination protein NusG OS=Shigella flexneri GN=nusG PE=3 SV=2 gi\|187427213, gi... - gi\|187730221\|ref\|YP_001882667.1\| transcription termination/antitermination factor NusG [Shigella boy... NUSG_ECOLI - Transcription antitermination protein nusG - Escherichia coli gi\|15834159, gi\|... - gi\|15834159\|ref\|NP_312932.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 st... gi\|188487728, gi... - gi\|188492529\|ref\|ZP_02999799.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|24115267, gi\|... - gi\|24115267\|ref\|NP_709777.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 3... gi\|110807832, gi... - gi\|110807832\|ref\|YP_691352.1\| transcription antitermination protein NusG [Shigella flexneri 5 str. 8... gi\|195939607 - gi\|195939607\|ref\|ZP_03084989.1\| transcription antitermination protein NusG [Escherichia coli O157:H7... gi\|30042995, gi\|... - gi\|30064735\|ref\|NP_838906.1\| transcription antitermination protein NusG [Shigella flexneri 2a str. 2... gi\|208812131, gi... - gi\|208812131\|ref\|ZP_03253460.1\| transcription termination/antitermination factor NusG [Escherichia c... NUSG_ECO57 - Transcription termination/antitermination protein NusG OS=Escherichia coli O157:H7 GN=nusG PE=3 SV=2 gi\|208739955, gi... - gi\|208819832\|ref\|ZP_03260152.1\| transcription termination/antitermination factor NusG [Escherichia c... EG10667 - transcription termination factor / Stabilizes phage lambda protein N-NusA-RNAP antitermination compl... gi\|209399471, gi... - gi\|209399471\|ref\|YP_002273498.1\| transcription termination/antitermination factor NusG [Escherichia ... gi\|15804572, gi\|... - gi\|15804572\|ref\|NP_290613.1\| transcription antitermination protein NusG [Escherichia coli O157:H7 ED... gi\|209914719, gi... - gi\|209921460\|ref\|YP_002295544.1\| transcription antitermination protein NusG [Escherichia coli SE11],... gi\|217321655, gi... - gi\|217325434\|ref\|ZP_03441518.1\| transcription termination/antitermination factor NusG [Escherichia c... gi\|189354220, gi... - gi\|189354220\|gb\|EDU72639.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189359775, gi... - gi\|189359775\|gb\|EDU78194.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189001643, gi... - gi\|189001643\|gb\|EDU70629.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|189370168, gi... - gi\|189370168\|gb\|EDU88584.1\| transcription termination/antitermination factor NusG [Escherichia coli ... gi\|170022015, gi... - gi\|170022015\|ref\|YP_001726969.1\| transcription antitermination protein NusG [Escherichia coli ATCC 8... gi\|170083442, gi... - gi\|170083442\|ref\|YP_001732762.1\| transcription termination factor [Escherichia coli str. K-12 substr... gi\|170682823, gi... - gi\|170682823\|ref\|YP_001746366.1\| transcription termination/antitermination factor NusG [Escherichia ...	207.0	[0..92]	[329..3]
gi\|161505371, gi... - gi\|161505371\|ref\|YP_001572483.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|167554342, gi... - gi\|205321448\|gb\|EDZ09287.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|161617284, gi... - gi\|161617284\|ref\|YP_001591249.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|168239843, gi... - gi\|197287542\|gb\|EDY26935.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTI - Transcription antitermination protein nusG OS=Salmonella typhi GN=nusG PE=3 SV=2 gi\|167995347, gi... - gi\|205326985\|gb\|EDZ13749.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|62182602, gi\|... - gi\|62182602\|ref\|YP_219019.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205346818, gi... - gi\|205346818\|gb\|EDZ33449.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|75240374, gi\|... - gi\|75240374\|ref\|ZP_00724314.1\| COG0250: Transcription antiterminator [Escherichia coli F11], gi\|1911... gi\|205335974, gi... - gi\|205335974\|gb\|EDZ22738.1\| transcription termination/antitermination factor NusG [Salmonella enteri... NUSG_ECOL6 - Transcription termination/antitermination protein NusG OS=Escherichia coli O6:H1 (strain CFT073 / AT... gi\|29139428, gi\|... - gi\|29143793\|ref\|NP_807135.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... NUSG_SALTI - Transcription termination/antitermination protein NusG OS=Salmonella typhi GN=nusG PE=3 SV=2 NUSG_ECOL6 - Transcription antitermination protein nusG OS=Escherichia coli O6 GN=nusG PE=3 SV=2 NUSG_SALTY - Transcription termination/antitermination protein NusG OS=Salmonella typhimurium (strain LT2 / SGSC1... NUSG_SALTY - Transcription antitermination protein nusG OS=Salmonella typhimurium GN=nusG PE=3 SV=2 gi\|156935821, gi... - gi\|156935821\|ref\|YP_001439737.1\| transcription antitermination protein NusG [Enterobacter sakazakii ... gi\|152972839, gi... - gi\|152972839\|ref\|YP_001337985.1\| transcription antitermination protein NusG [Klebsiella pneumoniae s... gi\|16762305 - gi\|16762305\|ref\|NP_457922.1\| transcription antitermination protein NusG [Salmonella enterica subsp. ... gi\|205354449, gi... - gi\|205354449\|ref\|YP_002228250.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|199605771, gi... - gi\|200388673\|ref\|ZP_03215285.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|213022866 - gi\|213022866\|ref\|ZP_03337313.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|207859326, gi... - gi\|207859326\|ref\|YP_002245977.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|91212813, gi\|... - gi\|91212813\|ref\|YP_542799.1\| transcription antitermination protein NusG [Escherichia coli UTI89], gi... gi\|213417733 - gi\|213417733\|ref\|ZP_03350853.1\| transcription antitermination protein NusG [Salmonella enterica subs... lcl\|NC_016856.1_... - [gene=nusG] [protein=transcription antitermination protein NusG] [protein_id=YP_005240427.1] [locati... gi\|110345909, gi... - gi\|110644317\|ref\|YP_672047.1\| transcription antitermination protein NusG [Escherichia coli 536], gi\|... gi\|213163867 - gi\|213163867\|ref\|ZP_03349577.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213585780 - gi\|213585780\|ref\|ZP_03367606.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213425733 - gi\|213425733\|ref\|ZP_03358483.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|170770133, gi... - gi\|170770133\|ref\|ZP_02904586.1\| transcription termination/antitermination factor NusG [Escherichia a... gi\|168467920, gi... - gi\|195629016\|gb\|EDX48408.1\| transcription termination/antitermination factor NusG [Salmonella enteri... gi\|194405932, gi... - gi\|194447628\|ref\|YP_002048135.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|117626246, gi... - gi\|117626246\|ref\|YP_859569.1\| transcription antitermination protein NusG [Escherichia coli APEC O1],... gi\|194442714, gi... - gi\|194442714\|ref\|YP_002043400.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194710918, gi... - gi\|194735416\|ref\|YP_002117051.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|194456260, gi... - gi\|194469896\|ref\|ZP_03075880.1\| transcription termination/antitermination factor NusG [Salmonella en... gi\|198241913, gi... - gi\|198241913\|ref\|YP_002218065.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|197249353, gi... - gi\|197249353\|ref\|YP_002149059.1\| transcription termination/antitermination factor NusG [Salmonella e... gi\|227837563, gi... - gi\|227885489\|ref\|ZP_04003294.1\| transcription antitermination protein NusG [Escherichia coli 83972],... gi\|237702749, gi... - gi\|237702749\|ref\|ZP_04533230.1\| transcription antitermination protein nusG [Escherichia sp. 3_2_53FA... gi\|238892452, gi... - gi\|238892452\|ref\|YP_002917186.1\| transcription antitermination protein [Klebsiella pneumoniae NTUH-K... gi\|238913727 - gi\|238913727\|ref\|ZP_04657564.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213650883 - gi\|213650883\|ref\|ZP_03380936.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213623116 - gi\|213623116\|ref\|ZP_03375899.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|214001616 - gi\|214001616\|ref\|ZP_03412351.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|213852740 - gi\|213852740\|ref\|ZP_03382272.1\| transcription antitermination protein NusG [Salmonella enterica subs... gi\|218561048, gi... - gi\|218561048\|ref\|YP_002393961.1\| transcription antitermination protein NusG [Escherichia coli S88], ... gi\|215489314, gi... - gi\|215489314\|ref\|YP_002331745.1\| transcription antitermination protein NusG [Escherichia coli O127:H... gi\|224585690, gi... - gi\|224585690\|ref\|YP_002639489.1\| transcription antitermination protein NusG [Salmonella enterica sub... gi\|218692263, gi... - gi\|218692263\|ref\|YP_002400475.1\| transcription antitermination protein NusG [Escherichia coli ED1a],...	205.0	[0..92]	[329..3]
gi\|36783867, gi\|... - gi\|37524443\|ref\|NP_927787.1\| transcription antitermination protein NusG [Photorhabdus luminescens su...	204.0	[0..93]	[329..4]
gi\|238717476, gi... - gi\|77960657\|ref\|ZP_00824519.1\| COG0250: Transcription antiterminator [Yersinia mollaretii ATCC 43969...	204.0	[0..92]	[329..3]

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Predicted Domain #1

Region A:
Residues: [1-95]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMKLQGGLLQ WSRSSLIPSI YTPINKTQFS IAACVIERNH QLTAKERRQL RNERRESKLG  60
   61 YSWREEVEEK LIKKPKKRYA TWTEELNLDT LAESG

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [96-333]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PQWWAVRVSR LRGHETAQIL ARALARQFPE MEFTVYAPSV QVKRKLKNGS ISVKPKPVFP  60
   61 GCIFIRCILN KEIHDSIRDV DGVGGFIGSK VGNTKRQINK PRPVDDSDLE AIFKQAKEAQ 120
  121 EKADSEFEEA DRAEEEASIL ASQELLALSN SDVIETVAES KPKRAPRKAT LATETKAKKK 180
  181 KLAAGSTVRV LSGTFAEFVG NLKKLNRKTA KATVGFTLFG KETLVEIDIN ELVPEIQS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1m1gA
Description:	N-utilization substance G protein NusG, insert domain; N-utilization substance G protein NusG, C-terminal domain; N-utilization substance G protein NusG, N-terminal domain
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits