YRC Public Data Repository - Protein Structure Prediction

Protein:	FZR2_ARATH
Organism:	Arabidopsis thaliana
Length:	483 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for FZR2_ARATH.

Description	E-value	Query Range	Subject Range
gi\|186464325, gi... - gi\|23128981\|ref\|ZP_00110817.1\| COG2319: FOG: WD40 repeat [Nostoc punctiforme PCC 73102], gi\|18668187...	607.0	[0..4]	[482..1203]
gi\|75701503, gi\|... - gi\|75907778\|ref\|YP_322074.1\| ribosome assembly protein 4 (RSA4) [Anabaena variabilis ATCC 29413], gi...	592.0	[0..4]	[482..1117]
YY46_NOSS1 - Uncharacterized WD repeat-containing protein alr3466 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=... gi\|25530855 - pir\|\|AC2239 WD-40 repeat protein [imported] - Nostoc sp. (strain PCC 7120)	583.0	[0..4]	[481..979]
gi\|37523925, gi\|... - gi\|37523925\|ref\|NP_927302.1\| WD repeat-containing protein [Gloeobacter violaceus PCC 7421], gi\|35214...	574.0	[0..4]	[481..599]
gi\|106891559, gi... - gi\|148655047\|ref\|YP_001275252.1\| WD-40 repeat-containing protein [Roseiflexus sp. RS-1], gi\|14856715...	563.0	[0..4]	[481..189]
gi\|116200089, gi... - gi\|88179479\|gb\|EAQ86947.1\| hypothetical protein CHGG_08200 [Chaetomium globosum CBS 148.51], gi\|1162...	562.0	[0..4]	[482..984]

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Predicted Domain #1

Region A:
Residues: [1-164]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEEDPTASN VITNSNSSSM RNLSPAMNTP VVSLESRINR LINANQSQSP SPSSLSRSIY  60
   61 SDRFIPSRSG SNFALFDLSP SPSKDGKEDG AGSYATLLRA AMFGPETPEK RDITGFSSSR 120
  121 NIFRFKTETH RSLNSFSPFG VDDDSPGVSH SGPVKAPRKV PRSP

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.154902
Match:	1r5mA
Description:	Crystal Structure Of The C-Terminal WD40 Domain Of Sif2
Matching Structure (courtesy of the PDB):

Predicted Domain #2

Region A:
Residues: [165-385]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YKVLDAPALQ DDFYLNLVDW SAQNVLAVGL GNCVYLWNAC SSKVTKLCDL GAEDSVCSVG  60
   61 WALRGTHLAV GTSTGKVQIW DASRCKRTRT MEGHRLRVGA LAWGSSVLSS GSRDKSILQR 120
  121 DIRCQEDHVS KLAGHKSEVC GLKWSYDNRE LASGGNDNRL FVWNQHSTQP VLKYSEHTAA 180
  181 VKAIAWSPHV HGLLASGGGT ADRCIRFWNT TTNTHLSSID T

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	7.69897
Match:	2oitA
Description:	No description for 2oitA was found.

Predicted Domain #3

Region A:
Residues: [386-483]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 CSQVCNLAWS KNVNELVSTH GYSQNQIIVW KYPTMSKIAT LTGHTYRVLY LAVSPDGQTI  60
   61 VTGAGDETLR FWNVFPSPKS QNTDSEIGSS FFGRTTIR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	84.0
Match:	1vyhC
Description:	PAF-AH Holoenzyme: Lis1/Alfa2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits