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View Structure Prediction Details

Protein: C3H24_ARATH
Organism: Arabidopsis thaliana
Length: 809 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for C3H24_ARATH.

Predicted Domain #1
Region A:
Residues: [1-167]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 METSSIEINE LPLATKTQTP PASVEPIPME TSSIDELPSS DSNATDNIEA VGEKRKRADE  60
   61 DEKTNLESSD TKITTPSPWW KTSLCSYFRR EASCSHGNEC KYAHGEAELR MKPDNTWDPT 120
  121 SERGKKAKAM KMSEHEEKEE DEVLFTEQMM ESIDGDEGGG GSVSVVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 14.39794
Match: 1rgoA
Description: Structural Basis for Recognition of the mRNA Class II AU-Rich Element by the Tandem Zinc Finger Domain of TIS11d
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [168-709]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSLSKCLVHL PNKWQSDELK KFLGEQGVLY KSAKKRRGMI VGFVTFENAE QLQSGVEILD  60
   61 GKTVNSSNLK IADVLPRTFD KNDARKSVKS ARDAVTPLAY LSYADQLEQK KTSIGQMLKK 120
  121 LARNARKACP NGNSLPQWVL TSRDRGGLAC NLEGIIESPI TNGYRNKCEF SVGLSLQGKP 180
  181 TVGFSLGSFC AGVTAVEEPV DCPNVSKIAS QYASIFQKFI ENSKFQVWNR FQHSGFWRQL 240
  241 TVREGRKPGV FSNDEDAITR IAEVMLMVQV CLTGSDEAEV ATEFEELAKA FAEGARASSP 300
  301 TLPLTVLVVQ NHSGISNVAP PDAPLQVLAI PISDNGTDQE QTTNVLTEAR IHDHINNLRF 360
  361 SISPTAFFQV NTVTAEKLYS IAGDWADLGP DTLLFDVCCG TGTIGLTLAH RVGMVIGIEM 420
  421 NASAVADAER NATINGISNC KFICSKAEDV MSSLLKQYLD VTQMEEAKPL SNANDDLNKQ 480
  481 IPSTEEMTNS EHVADQNLPP SNTQVEELQD NEQKDSSSLE PEKTTKPQFK NVVAIVDPPR 540
  541 SG

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 65.045757
Match: 1uwvA
Description: Crystal Structure of RumA, the iron-sulfur cluster containing E. coli 23S Ribosomal RNA 5-Methyluridine Methyltransferase
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [710-809]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHPAVIKALR THPRLKRLVY ISCNPETLVA NAIELCTPSF DEPDRGNKNY RGRKKIGIAA  60
   61 LARHRAKSMP TSEAFRPVKA MAVDLFPHTD HCEMVMLLER 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 20.522879
Match: 1zq9A
Description: Crystal structure of human Dimethyladenosine transferase
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle