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View Structure Prediction Details

Protein: gi|36787741, gi|...
Organism: Photorhabdus luminescens subsp. laumondii TTO1
Length: 149 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|36787741, gi|....

Description E-value Query
Range
Subject
Range
gi|21957466, gi|... - gi|22124657|ref|NP_668080.1| DNA polymerase III subunit chi [Yersinia pestis KIM], gi|21957466|gb|AA...
199.0 [0..1] [148..10]

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Predicted Domain #1
Region A:
Residues: [1-149]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSATFYLLE QPSPQADLQA HEWLACQFAA DQWRAGKRVL IACENQQQAE KLDEALWQRE  60
   61 PHQFVPHNLA GEGPRYGAPV ELCWPQKRGN APRDILINLL PQFADFATAF HEVIDFVPID 120
  121 ENLKQLARER YKSYRSVGFN LTMATPPTY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 51.0
Match: 1em8A
Description: Crystal structure of chi and psi subunit heterodimer from DNA POL III
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
DNA-directed DNA polymerase activity 10.5323303172282 bayes_pls_golite062009
DNA polymerase activity 10.4830348241445 bayes_pls_golite062009
nucleotidyltransferase activity 7.90238563893338 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 3.96930833729486 bayes_pls_golite062009
transferase activity 3.35643625144672 bayes_pls_golite062009
exonuclease activity 1.41483511359931 bayes_pls_golite062009
catalytic activity 1.13824203225664 bayes_pls_golite062009
5'-3' exonuclease activity 0.602142505358069 bayes_pls_golite062009
nuclease activity 0.0887585005803604 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle