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View Structure Prediction Details

Protein: gi|20148671, gi|...
Organism: Arabidopsis thaliana
Length: 266 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20148671, gi|....

Description E-value Query
Range
Subject
Range
gi|21593197, gi|... - gi|21593197|gb|AAM65146.1| unknown [Arabidopsis thaliana], gi|20197031|gb|AAC27479.2| expressed prot...
394.0 [0..1] [266..1]

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Predicted Domain #1
Region A:
Residues: [1-77]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDRGGSFVA VRRISQGLER GSVYHSSSAE VVAGSAAWLG RGLSCVCVQG RDGDPRPSFD  60
   61 LTPAQEECLQ RLQSRID

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [78-266]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VAYDSSIPQH QEALKDLWKL AFPEEELHGI VSDQWKEMGW QGKDPSTDFR GGGFISLENL  60
   61 LYFARKFPKS FHGLLRKQVG DRSVWEYPFA VAGINITFML IQMLDLEAVK PRSIVGETFL 120
  121 RFLSVNESAF DLLYCIAFKL MDQQWLSMRA SYMEFNTVMK STRRQLEREI MIEDITSLED 180
  181 LPSYSLLSQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 96.130768
Match: PF04727.4
Description: No description for PF04727.4 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle