YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|19699100, gi|...
Organism: Arabidopsis thaliana
Length: 684 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19699100, gi|....

Description E-value Query
Range
Subject
Range
gi|42571579 - gi|42571579|ref|NP_973880.1| wound-responsive family protein [Arabidopsis thaliana]
796.0 [0..1] [684..1]
gi|53980846 - gi|53980846|gb|AAV24767.1| unknow protein [Oryza sativa Japonica Group]
614.0 [0..31] [676..58]
gi|53133566 - gi|53133566|emb|CAG32112.1| hypothetical protein [Gallus gallus]
359.0 [0..86] [682..85]
unc-89 - status:Partially_confirmed UniProt:O01761 protein_id:AAP68958.1
348.0 [0..98] [668..1383]

Back

Predicted Domain #1
Region A:
Residues: [1-168]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEVNEMSGG SIGGELLRAS PKVLTAGDRK LLKVELRPGD TTYVSWKKLM RDAGKVNGLS  60
   61 ASVPDPPPNA NPNLEFRIAP GHPVEIETNE QPHSNRFNAV IEKIERLYKG NDSSDGEELD 120
  121 GAPDDDEYDT EDSFIDDAEL DEYFEVDNST VKHDGFYVNR GKLERMEP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [169-391]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 STTSNQQPKK RRRKDSAKPC RDAVDVSDKH TKLSITARKK DQSTAPGSWK TQESPLPSGA  60
   61 QDANTSVPLD DVKHSDRANH QSRNDTSHKS RETGSSSALH QKYSNKSLHQ QSTSLLGKSP 120
  121 PNVFAEVTVV RQKENNGMHQ LANVTGSRQS SQASKKDGSN VKSKTSILEK AIRELEKVVV 180
  181 ESRPPAITEN QEADTSSQAV KRRLPRDVKL KLAKVARIAQ ASQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [392-575]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GKHSTELINR LMSIVGHLIQ LRSLKRNLKI MIDMGDSATR EKDTRFKQIN NEVLDMIKAK  60
   61 VSLMESQAIK PEGATSDDFQ DSVEKPSLKK FVMDAALEDK LCDLYDIFID GLDEDQGPQT 120
  121 KKLYVNLAEL WPNRLMDYRG IKHAIFRAKE RRKALYGNLA KEMDQTKMKK SMKQLVPRTD 180
  181 CTAQ

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [576-684]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PNTELVVQRQ HSGEKKLIVD PNATSTSVVT SQTMVDRSNQ QQPEKLKGIS SSCNPTEETR  60
   61 VVKRKNEAVM AEKQVVLALK KPEHPQTRVI PAPQNLNIPR TTPDLNLPS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle