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View Structure Prediction Details

Protein: CIPKA_ARATH
Organism: Arabidopsis thaliana
Length: 479 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPKA_ARATH.

Description E-value Query
Range
Subject
Range
gi|8777339 - gi|8777339|dbj|BAA96929.1| serine/threonine protein kinase [Arabidopsis thaliana]
389.0 [0..1] [456..1]

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Predicted Domain #1
Region A:
Residues: [1-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENKPSVLTD KYDVGRLLGQ GTFAKVYYGR SILTNQSVAI KMIDKEKVMK VGLIEQIKRE  60
   61 ISVMRIARHP NVVELYEVMA TKTRIYFVME YCKGGELFNK VAKGKLRDDV AWKYFYQLIN 120
  121 AVDFCHSREV YHRDIKPENL LLDDNENLKV SDFGLSALAD CKRQDGLLHT TCGTPAYVAP 180
  181 EVINRKGYDG TKADIWSCGV VLFVLLAGYL PFHDSNLMEM YRKIGKADFK APSWFAPEVR 240
  241 RLLCKMLDPN PETRITIARI RESSWFRKGL HMKQKKMEKR VKEINSVEAG TAGTNENGAG 300
  301 PSENGAGPSE NGDRVTEENH TDEPTNLNAF DLIAL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.39794
Match: 1zmuA
Description: Catalytic and ubiqutin-associated domains of MARK2/PAR-1: Wild type
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [336-479]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SAGFDLAGLF GDDNKRESRF TSQKPASVII SKLEEVAQRL KLSIRKREAG LFKLERLKEG  60
   61 RKGILSMDAE IFQVTPNFHL VEVKKSNGDT LEYQKLVAED LRPALSDIVW VWQGEKDELT 120
  121 SQQETEYQQQ QQQEQQEQEE PLKF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 19.0
Match: 2ehbD
Description: No description for 2ehbD was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle