YRC Public Data Repository - Protein Structure Prediction

Protein:	PHS_XENLA
Organism:	Xenopus laevis
Length:	104 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PHS_XENLA.

Description	E-value	Query Range	Subject Range
gi\|47221757 - gi\|47221757\|emb\|CAG08811.1\| unnamed protein product [Tetraodon nigroviridis]	147.0	[0..1]	[103..35]
CE18240 - WBGene00020397 locus:pcbd-1 status:Partially_confirmed	144.0	[0..4]	[101..80]
gi\|157745959 - gi\|157745959\|ref\|XP_001668076.1\| Hypothetical protein CBG03930 [Caenorhabditis briggsae AF16] gi\|39595301, gi\|... - gi\|39595301\|emb\|CAE60338.1\| Hypothetical protein CBG03930 [Caenorhabditis briggsae], gi\|187036132\|em...	143.0	[0..4]	[101..47]
gi\|52354802, gi\|... - gi\|52354802\|gb\|AAH82836.1\| LOC397951 protein [Xenopus laevis], gi\|147898540\|ref\|NP_001081611.1\| XDCo...	143.0	[0..1]	[104..1]
gi\|56553689, gi\|... - gi\|56553690\|pdb\|1RU0\|B Chain B, Crystal Structure Of Dcoh2, A Paralog Of Dcoh, The Dimerization Cofa...	143.0	[0..1]	[103..3]
gi\|57033048, gi\|... - gi\|57033048\|gb\|AAH88970.1\| LOC496367 protein [Xenopus laevis], gi\|148237203\|ref\|NP_001088985.1\| hypo... gi\|52139103, gi\|... - gi\|89271979\|emb\|CAJ82265.1\| 6-pyruvoyl-tetrahydropterin synthase/dimerization cofactor of hepatocyte...	142.0	[0..1]	[104..1]
gi\|73587149 - gi\|73587149\|gb\|AAI03435.1\| PCBD1 protein [Bos taurus]	141.0	[0..1]	[104..40]
gi\|157132864, gi... - gi\|157132864\|ref\|XP_001662676.1\| hypothetical protein AaeL_AAEL002898 [Aedes aegypti], gi\|108881639\|...	140.0	[0..5]	[100..123]

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Predicted Domain #1

Region A:
Residues: [1-104]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAGKVHRLSG EEREQLLPNL RAVGWHELDG RDAICKEFHF KDFNRAFGFM TRVALQAEKL  60
   61 DHHPEWFNVY DKVHITLSTH DCGGLSERDI NLASFIEQIA ASLS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	33.30103
Match:	1dchA
Description:	Pterin-4a-carbinolamine dehydratase (PCD)/dimerization cofactor of HNF1 (DCoH)
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits