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View Structure Prediction Details

Protein: REV3_ARATH
Organism: Arabidopsis thaliana
Length: 1890 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for REV3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-88]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADSQSGSNV FSLRIVSIDY YMASPIPGYN ICYSSFQGSE VNEVPVIRIY GSTPAGQKTC  60
   61 LHIHRALPYL YIPCSEIPLE HHKGVDGS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 5.221849
Match: 2jm1A
Description: No description for 2jm1A was found.

Predicted Domain #2
Region A:
Residues: [89-205]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLALSLELEK ALKLKGNAAS KRQHIHDCEI VRAKKFYGYH STEEAFVKIY LSYHPPDVAR  60
   61 AASLLLAGAV LGKSLQPYES HIPFILQFLV DYNLYGMGHV HISKMKFRSP VPHHFRP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [206-329]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRFDLDDCPG QRIDEVAITK ANSSAAASVS FPVWSLSTIP GQWMWNLSEE SDTPLSQSQH  60
   61 RHQHHYRRQS LCELEGDATS SDILNQQFKM YNSLSQAQSD TNMVQSLVAI WEEEYERTGV 120
  121 HDAP

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [330-560]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 IPPDPGKPSA ADVLQTMSDY VGFGNMLKEM LNKVELSPPG MKPTAVSSAG PDMHAKPEIT  60
   61 DLQALNHMVG TCSEFPASEQ LSPLGEKSEE ASMENDEYMK TPTDRDTPAQ IQDAEALGLF 120
  121 KWFASSQAAE DINSDDEILR ETILSPLLPL ASINKVLEMA STDYVSQSQK ECQDILDSQE 180
  181 NLPDFGSSTK RALPSNPDSQ NLRTSSDKQS LEIEVASDVP DSSTSNGASE N

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #5
Region A:
Residues: [561-730]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SFRRYRKSDL HTSEVMEYKN RSFSKSNKPS NSVWGPLPFT LTKNLQKDFD STNASDKLGL  60
   61 TKISSYPMNE MTDNYIVPVK EHQADVCNTI DRNVLAGCSL RDLMRKKRLC HGESPVSQHM 120
  121 KSRKVRDSRH GEKNECTLRC EAKKQGPALS AEFSEFVCGD TPNLSPIDSG 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #6
Region A:
Residues: [731-1775]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NCECNISTES SELHSVDRCS AKETASQNSD EVLRNLSSTT VPFGKDPQTV ESGTLVSSNI  60
   61 HVGIEIDSVQ KSGREQESTA NETDETGRLI CLTLSKKPPS LDCLSAGLQD SAHSHEIHAR 120
  121 EKQHDEYEGN SNDIPFFPLE DNKEEKKHFF QGTSLGIPLH HLNDGSNLYL LTPAFSPPSV 180
  181 DSVLQWISND KGDSNIDSEK QPLRDNHNDR GASFTDLASA SNVVSVSEHV EQHNNLFVNS 240
  241 ESNAYTESEI DLKPKGTFLN LNLQASVSQE LSQISGPDGK SGPTPLSQMG FRDPASMGAG 300
  301 QQLTILSIEV HAESRGDLRP DPRFDSVNVI ALVVQNDDSF VAEVFVLLFS PDSIDQRNVD 360
  361 GLSGCKLSVF LEERQLFRYF IETLCKWDPD VLLGWDIQGG SIGFLAERAA QLGIRFLNNI 420
  421 SRTPSPTTTN NSDNKRKLGN NLLPDPLVAN PAQVEEVVIE DEWGRTHASG VHVGGRIVLN 480
  481 AWRLIRGEVK LNMYTIEAVS EAVLRQKVPS IPYKVLTEWF SSGPAGARYR CIEYVIRRAN 540
  541 LNLEIMSQLD MINRTSELAR VFGIDFFSVL SRGSQYRVES MLLRLAHTQN YLAISPGNQQ 600
  601 VASQPAMECV PLVMEPESAF YDDPVIVLDF QSLYPSMIIA YNLCFSTCLG KLAHLKMNTL 660
  661 GVSSYSLDLD VLQDLNQILQ TPNSVMYVPP EVRRGILPRL LEEILSTRIM VKKAMKKLTP 720
  721 SEAVLHRIFN ARQLALKLIA NVTYGYTAAG FSGRMPCAEL ADSIVQCGRS TLEKAISFVN 780
  781 ANDNWNARVV YGDTDSMFVL LKGRTVKEAF VVGQEIASAI TEMNPHPVTL KMEKVYHPCF 840
  841 LLTKKRYVGY SYESPNQREP IFDAKGIETV RRDTCEAVAK TMEQSLRLFF EQKNISKVKS 900
  901 YLYRQWKRIL SGRVSLQDFI FAKEVRLGTY STRDSSLLPP AAIVATKSMK ADPRTEPRYA 960
  961 ERVPYVVIHG EPGARLVDMV VDPLVLLDVD TPYRLNDLYY INKQIIPALQ RVFGLVGADL1020
 1021 NQWFLEMPRL TRSSLGQRPL NSKNS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 152.0
Match: 2gv9A
Description: No description for 2gv9A was found.

Predicted Domain #7
Region A:
Residues: [1776-1890]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HKTRIDYFYL SKHCILCGEV VQESAQLCNR CLQNKSAAAA TIVWKTSKLE REMQHLATIC  60
   61 RHCGGGDWVV QSGVKCNSLA CSVFYERRKV QKELRGLSSI ATESELYPKC MAEWF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle