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View Structure Prediction Details

Protein: gi|29028816, gi|...
Organism: Arabidopsis thaliana
Length: 208 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|29028816, gi|....

Description E-value Query
Range
Subject
Range
gi|55296080, gi|... - gi|55741362|ref|XP_550346.1| putative early nodule-specific-like protein ENOD8 [Oryza sativa (japoni...
gi|55741362 - ref|XP_550346.1| putative early nodule-specific-like protein ENOD8 [Oryza sativa (japonica cultivar-...
gi|218197644 - gi|218197644|gb|EEC80071.1| hypothetical protein OsI_21788 [Oryza sativa Indica Group]
143.0 [0..1] [206..1]

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Predicted Domain #1
Region A:
Residues: [1-208]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLKQLEGLL GDLEQFSNPK VEFEQYPTGP HIASRMLFTA ENSYGDITDK VVADFGCGCG  60
   61 TLSAAAALLD AASVIGFDID PESLETATLN AEELEVEIDF VQCDITKLEL KGLIVDTVVM 120
  121 NPPFGTRKKG ADMEFLSAAM KVASKAVYSL HKTSTREHIK RAALRDFNAK SAEVICELRY 180
  181 DLPKLYKFHK RKEVDIAVDL WRFEPRQN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.69897
Match: 1wy7A
Description: crystal structure of a putative RNA methyltransferase PH1948 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
transferase activity 0.444447673749491 bayes_pls_golite062009
catalytic activity 0.352837241386487 bayes_pls_golite062009
methyltransferase activity 0.0533354664784367 bayes_pls_golite062009
transferase activity, transferring one-carbon groups 0.0416815045255102 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle