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View Structure Prediction Details

Protein: PTA14_ARATH
Organism: Arabidopsis thaliana
Length: 483 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PTA14_ARATH.

Description E-value Query
Range
Subject
Range
gi|110740216 - gi|110740216|dbj|BAF02006.1| hypothetical protein [Arabidopsis thaliana]
392.0 [0..1] [483..1]

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Predicted Domain #1
Region A:
Residues: [1-483]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSVSLQFL TNTFISKPQG FCNGIVSAPR PRSNLLRDRQ NGVRPIKVAS IETQPFPLFQ  60
   61 SPASEESSSS ELETADPDFY KIGYVRSVRA YGVEFKEGPD GFGVYASKDI EPRRRARVIM 120
  121 EIPLELMITI RQKHPWMFFP DIVPIGHPIF DIINSTDPEI DWDIRLACLL LFSFDRDDHF 180
  181 WRLYGDFLPA ADECSSLLLA TEEDLAELQD PDLVSTIRQQ QKRILDFWEK NWHSGVPLKI 240
  241 KRLAEDPERF IWAVSMAQTR CISMQTRVGA LVQELNMMIP YADMLNHSFE PNCFLHWRPK 300
  301 DRMLEVMSNA GQDIKKGEEM TINYMPGQKN NMLMERYGFS TPVNPWDAIK FSGDSRIHLN 360
  361 SFLSVFNIYG LPEEYYHDSE LSRGDTFVDG AVIAAARTLP TWSDIDLPPI PSAERKAVKE 420
  421 LQDECRKMLA EYPTTAEQDQ KLLDSMSEAR TTFATAVKYR MHRKMFIGKI IKALDIYQER 480
  481 LLY

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 58.39794
Match: 1mlvA
Description: RuBisCo LSMT C-terminal, substrate-binding domain; RuBisCo LSMT catalytic domain
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle