YRC Public Data Repository - Protein Structure Prediction

Protein:	ATP5E_ARATH
Organism:	Arabidopsis thaliana
Length:	70 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ATP5E_ARATH.

Description	E-value	Query Range	Subject Range
ATP5E_IPOBA - ATP synthase subunit epsilon, mitochondrial OS=Ipomoea batatas PE=1 SV=2	116.0	[0..1]	[69..1]
gi\|21068676 - gi\|21068676\|emb\|CAD31844.1\| putative epsilon subunit of mitochondrial F1-ATPase [Cicer arietinum]	113.0	[0..1]	[66..1]
ATP5E_MAIZE - ATP synthase subunit epsilon, mitochondrial OS=Zea mays PE=3 SV=1	106.0	[0..2]	[69..3]
gi\|50942951, gi\|... - gi\|50942951\|ref\|XP_481003.1\| putative ATP synthase epsilon chain, mitochondrial [Oryza sativa (japon...	104.0	[0..2]	[65..3]
gi\|25044815 - gi\|25044815\|gb\|AAM28278.1\| ATP synthase epsilon subunit [Ananas comosus]	102.0	[0..8]	[68..15]
gi\|55243554, gi\|... - gi\|58380900\|ref\|XP_310858.2\| ENSANGP00000012584 [Anopheles gambiae str. PEST], gi\|55243554\|gb\|EAA067...	93.0	[0..8]	[60..31]
gi\|66819299 - gi\|66819299\|ref\|XP_643309.1\| hypothetical protein DDB0217763 [Dictyostelium discoideum] gi\|60471460 - gi\|60471460\|gb\|EAL69420.1\| hypothetical protein DDB0217763 [Dictyostelium discoideum]	86.0	[0..9]	[63..17]
gi\|157104383, gi... - gi\|157104383\|ref\|XP_001648383.1\| hypothetical protein AaeL_AAEL004060 [Aedes aegypti], gi\|108880367\|...	85.0	[0..9]	[60..3]

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Predicted Domain #1

Region A:
Residues: [1-70]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNAAVPFW RAAGMTYISY SNICANIVRN CLKEPHKAEA LTREKVHFSL SKWADGKPQK  60
   61 PVLRSDTPEV

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

		MCM Score	SCOP Match	SCOP Description
View	Download	0.877	a.64.1	Saposin

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits