| Protein: | twk-12 |
| Organism: | Caenorhabditis elegans |
| Length: | 713 amino acids |
| Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for twk-12.
| Description | E-value | Query Range |
Subject Range |
|
|
264.0 | [0..82] | [696..73] |
|
Region A: Residues: [1-413] |
1 11 21 31 41 51
| | | | | |
1 MTLFKKIQWF CNLIRLRSYY KFLLLIAYTA FGAWLFRTYE LQADIKRRSV FGNTTNLVRR 60
61 QLAERWIEMH KDAVLRNDSA LRFRRAAEAV EWLLDELNLS DHIRDLSEET PWTWTGAMFY 120
121 AGQLYTTIGY GYPTTKTDEG RICTIFYALF GIPCFLMYLK IENAIEWKKD KQLGKRALKM 180
181 HGLINDSFQS IGKTLSKKMK KYYKKLRRSR VGRILLPTRV TAMKDGFEDP EAAEERKKKP 240
241 FPIPIAIIML IIWICFSASM FCIWEDTWVF SSAVYFFIVS ISTVGLGDML FRTPDMMVFN 300
301 FLLILVGLAL LSMCFELITD RVAKWKQKRF DEHIKKVQKM AFQVFEKDPF IEEAPPLGIR 360
361 MAPNLMQIAA THVSEEKRGF FAEFKDWFAG KVTDNVIQSK LEDSDDESDS EEA
|
| Detection Method: |  |
| Confidence: | 50.0 |
| Match: | 2a79B |
| Description: | Mammalian Shaker Kv1.2 potassium channel- beta subunit complex |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [414-454] |
1 11 21 31 41 51
| | | | | |
1 LEEFDSPQIA TVTANDLIVC SNGAATRRVS KQSYALSDIS N
|
| Detection Method: | |
| Confidence: | 4.221849 |
| Match: | 1xl4A |
| Description: | Intermediate gating structure 1 of the inwardly rectifying K+ channel KirBac3.1 |
Matching Structure (courtesy of the PDB): |
|
|
Region A: Residues: [455-556] |
1 11 21 31 41 51
| | | | | |
1 LSNSKILPGN NYGQLLDRIK AMEKFKPKKN DLDSRMFAKF LENKKLAKIL EQTELRELAT 60
61 VSCQTDLSGL VVQRRNPKGR HARIGSCSSQ STMSTLLPNK MH
|
| Detection Method: | |
Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
|
Region A: Residues: [557-713] |
1 11 21 31 41 51
| | | | | |
1 APDEDSVMSF TFGDLKFDYK TEPFIDEYYI RESNHSIFDF DEDETVRIPQ KMLISRPGMP 60
61 PPPPSRPLNL ASPLRTLLEK EQKYDEDPEI QLTPRRLNSL SDIQARKVKL GVDENLQHAR 120
121 LVCGLLPQDF DSPSTSTSTS MIDSGYELSK RDASTMA
|
| Detection Method: | |
Shown below is our most confident prediction for this domain.
Click here to view all matches.
Found no confident structure predictions for this domain.
