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View Structure Prediction Details

Protein: CE37399
Organism: Caenorhabditis elegans
Length: 485 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CE37399.

Description E-value Query
Range
Subject
Range
gi|187021068, gi... - gi|39592163|emb|CAE75383.1| Hypothetical protein CBG23370 [Caenorhabditis briggsae], gi|187021068|em...
gi|157762564 - gi|157762564|ref|XP_001673624.1| Hypothetical protein CBG23370 [Caenorhabditis briggsae AF16]
452.0 [0..1] [485..1]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSATRYKRLT DIDLDADINT IPESRSIQST LIGFILLFGF VACMIFLTSV QAHPARVSLQ  60
   61 DNGKNSPILR TRSQEKPRKR NI

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-485]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKWMDNYFTA DESQFLNCSE MIKNNKDVIE LYVNNGRMKL DNERLFELPM DCPSIKNRIY  60
   61 GDMPSFRPLK RPIAFVRTIY KIYELQEALL SISYHPDNVF CFVMDSKSTD RLKESVRIMS 120
  121 SCFTNVVVLG KEYSLNSGGH GQDPAHFDCL KTILDRKWDH AIILQNFDLI IKTPYQLSDI 180
  181 SESLNYTSIM GFDHGFSYRY NTKAKWTPAG MKLFKIETGV PNEILNRNLI VRKSLNEVIV 240
  241 SKVFVKSMFE KLNMDIIIKL FDDNDYYGVD EMLVQTLYEN YLGLEGQMES NCTRNHNDIL 300
  301 TRMTHWDFSG PNGFDKECHS KWKRHGICIM GVEYMNELIK SQQVIANKVM ATFDFGTIAC 360
  361 MREMIKRNTA GETPNTQWLT SFPQFREMQQ KANGTYDRNK FDC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 95.69897
Match: 2gakA
Description: No description for 2gakA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle