YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|20857250, gi|...
Organism: Arabidopsis thaliana
Length: 250 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|20857250, gi|....

Description E-value Query
Range
Subject
Range
gi|145360022, gi... - pir||D84547 NAM (no apical meristem)-like protein [imported] - Arabidopsis thaliana, gi|2264373|gb|A...
271.0 [0..1] [250..27]
gi|31322582 - gi|31322582|gb|AAP35056.1| NAC-domain protein 485 [Brassica napus]
230.0 [0..2] [242..36]
gi|21105748 - gi|21105748|gb|AAM34773.1|AF509873_1 nam-like protein 10 [Petunia x hybrida]
222.0 [0..3] [242..31]

Back

Predicted Domain #1
Region A:
Residues: [1-134]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVYGKRSSVE VIGFLNIYRH DPWDLPGLSR IGEREWYFFV PRERKHGNGG RPSRTTEKGY  60
   61 WKATGSDRKI ISLSEPKRVI GLKKTLVFYR GRAPGGSKTD WVMNEFRMPD NCSLPKDVVL 120
  121 CKIYRKATSL KVLE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 49.154902
Match: 1ut4A
Description: Structure of the conserved domain of ANAC, a member of the NAC family of transcription factors
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [135-250]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QRAEMEAKMN QTCPNSPLSS SETISFVGKE ENMMTSFRAP QVIAMEEANK IQMHQENAKT  60
   61 EEKQREAETK EPSSSLKLPF GSLPELQLPK PGVEWDQLLS ISPWLQNLTP IVNIYW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle