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View Structure Prediction Details

Protein: PIP11_ORYSJ
Organism: Oryza sativa Japonica Group
Length: 289 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PIP11_ORYSJ.

Description E-value Query
Range
Subject
Range
gi|2696804 - gi|2696804|dbj|BAA24016.1| water channel protein [Oryza sativa Japonica Group]
317.0 [0..1] [289..1]

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Predicted Domain #1
Region A:
Residues: [1-289]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGKEEDVRL GANRYSERQP IGTAAQGAGD DKDYKEPPPA PLFEPGELKS WSFYRAGIAE  60
   61 FVATFLFLYI TILTVMGVSK SSSKCATVGI QGIAWSFGGM IFALVYCTAG ISGGHINPAV 120
  121 TFGLFLARKL SLTRAIFYIV MQCLGAICGA GVVKGFQQGL YMGNGGGANV VASGYTKGDG 180
  181 LGAEIVGTFI LVYTVFSATD AKRNARDSHV PILAPLPIGF AVFLVHLATI PITGTGINPA 240
  241 RSLGAAIIYN KDHAWNDHWI FWVGPFVGAA LAAIYHQVII RAIPFKSRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 73.522879
Match: 2b5fA
Description: Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle