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View Structure Prediction Details

Protein: ppk28-PB
Organism: Drosophila melanogaster
Length: 632 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ppk28-PB.

Description E-value Query
Range
Subject
Range
ppk28-PA - The gene pickpocket 28 is referred to in FlyBase by the symbol Dmel\ppk28 (CG4805, FBgn0030795). It ...
512.0 [0..1] [632..1]

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Predicted Domain #1
Region A:
Residues: [1-561]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRTLTESRRR QSGSSGCKKD SESDDDENTI CSRAAIKRSV VYYLKNSTLH GLKYIAEESI  60
   61 TIPERYVSKV AESISLSQRS RTNSYFISPF SIFFGLAFVL VVILSVFFIS NVYVKWSASP 120
  121 IIISTSAKQK LTSNMPFPAI TICNLNQALL SKVDRIGRTS TNFSLLMGLC DQGGDTTISY 180
  181 IGTWKYFKAI LVDVAQPCEK MLLYCSFGSR EEDCSWLFTS ILTDDGLCCN FNALHPSYLI 240
  241 RNYSDDVRLE TAHPNTRYEL IDWTPEKGYA RNLPEFYFPR TSGGTGIRMG LTVVLNASIA 300
  301 EYYCTKSMSV GFKVLVHNPA ELPKVSNYGF VVTAGREARI PIEPVYEDAL PTIRSIKKSV 360
  361 RRCLFSDEND LAYYRTYSRK NCELECEAKL LLRECSCVLY YLPRIDPLAR VCGPNDNQCT 420
  421 DRVQTEIESS LTNLSCENCW PGCFELTYRA TLSTASIVSD PRFQAGENLP EYIFHGPYSN 480
  481 ASEISILHFY YMTNIFRSTT KSEMFGFTEF LSNTGGLLGL FMGFSIFSVI EIFFYITVRP 540
  541 YCASRTLRQR HKRRLEQLSW L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 94.0
Match: 2qtsA
Description: No description for 2qtsA was found.

Predicted Domain #2
Region A:
Residues: [562-632]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TPIRMPVRRA LRRNRGGLLR NPPPPAYSDL QKFRGKLDKP ETCKRKLWRT LQVRPVVDRA  60
   61 DEELPTYPYL D

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle