YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|162464278, gi...
Organism:	Zea mays
Length:	126 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|162464278, gi....

Description	E-value	Query Range	Subject Range
gi\|94420296 - gi\|94420296\|ref\|XP_001005759.1\| PREDICTED: similar to prefoldin subunit 4 [Mus musculus]	148.0	[0..3]	[126..43]
gi\|13160148, gi\|... - gi\|1620561\|gb\|AAB17063.1\| C-1, emb\|CAB98782.2\| dJ1162C3.1 (Prefoldin 4 (C-1)) [Homo sapiens]	131.0	[0..1]	[126..1]
gi\|73992603 - gi\|73992603\|ref\|XP_534459.2\| PREDICTED: similar to prefoldin 4 [Canis familiaris]	129.0	[0..4]	[126..7]
gi\|60654257 - gi\|60654257\|gb\|AAX29821.1\| prefoldin 4 [synthetic construct]	126.0	[0..7]	[126..11]
PFD4_BOVIN - Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1	123.0	[0..7]	[126..11]
gi\|90302566, gi\|... - gi\|90302566\|gb\|EAS32197.1\| hypothetical protein CIMG_03221 [Coccidioides immitis RS], gi\|119186347\|r...	123.0	[0..2]	[124..33]
PFD4_AVEFA - Probable prefoldin subunit 4 OS=Avena fatua GN=VIP3 PE=2 SV=1	123.0	[0..1]	[126..1]
gi\|54633377, gi\|... - gi\|62733483\|gb\|AAX95600.1\| hypothetical protein [Oryza sativa (japonica cultivar-group)], gb\|AAV3577... gi\|125544957 - gi\|125544957\|gb\|EAY91096.1\| hypothetical protein OsI_12705 [Oryza sativa Indica Group]	123.0	[0..1]	[126..1]

Back

Predicted Domain #1

Region A:
Residues: [1-126]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQQGDGTEAQ VTWEDQQNIN RFGRLNNRLH ELQDEIKLAK ETNENLDDAG NELILSDEDV  60
   61 VRFQIGEVFA HMPRDDVETR LEQMKEDAAK KLERLEEEKE SILAQMAELK KILYGKFKDA 120
  121 INLEED

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	28.468521
Match:	PF01920.12
Description:	No description for PF01920.12 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.2	NCBI nr	03/2009
PSI-BLAST	2.2.22	FFAS	ffas03
PDB	10/2008	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits