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View Structure Prediction Details

Protein: TBCD_ARATH
Organism: Arabidopsis thaliana
Length: 1254 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for TBCD_ARATH.

Predicted Domain #1
Region A:
Residues: [1-211]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRAEEMSP TKIEIETAVK IEEEEDDEHD SKERVLQRYF LQEWKLVKSL LDDIVSNGRV  60
   61 VDPTSVHKIR SIMDKYQEQG QLVEPYLESI VSPLMFIIRS KTVDLEAKPD EILEIIKPIS 120
  121 IIIYALVTVC GYKAVIKFFP HQVSDLELAV LLLEKCHSTN SVSALRQEST GEMEAKCVTL 180
  181 LWLSILVLVP FDISSVDTSI ADDKTFGVDD L

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 67.39794
Match: 1u6gC
Description: Crystal Structure of The Cand1-Cul1-Roc1 Complex
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [212-1254]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APLVLKILGF CKDYLCSAGP MRRISGLLLS KLLTRPDMGK AFSSFFEWTY EVLSCKEDSV  60
   61 TNHFRLLGVM EALSAIFKTA SRKVLLDVLP IVLNDVTVLS KSNAAAKSSL LRKYLIKLTQ 120
  121 RIGLVCLPHR SPSWRYVAQT ASLSENMSTS SSQRLAPDHT VTAILQPESL DDQEDEDMDV 180
  181 PEILEEIIEM LLSGLRDTDT VVRWSAAKGI GRVTSRLTSV LSDEVLSSVL ELFSPGEGDG 240
  241 SWHGGCLALA ELARRGLLLP RSFPLVVPVI VKALHYDVRR GPHSVGSHVR DAAAYVCWAF 300
  301 GRAYSHKDMK NVLDQLAPDL LIVGSFDREV NCRRAAAAAF QENVGRQGNY PHGIDIVSIA 360
  361 DYFSLSSRVN SYLQVAVSIA QYEGYLYPFV DELLYNKICH WDKSLRELAA EALAPLVKYE 420
  421 PKHFANYVLE KLIPCTLSTD LCMRHGATLA AGEVVLALHQ CGYVLSADSQ KRMAGIVPSI 480
  481 EKARLYRGKG GEIMRLAVSR FIECISLSHV TLAERTERIL LDTLTENLRH PNSQIQNAAV 540
  541 SAVKQLVQSY LVGNDKKSVD LILKHLKHLT DPNVAVRRGS ALALGVLPYE LLTAKWKDIV 600
  601 LKLCSACKIE VNPEDRDAEA RVNAVKGLTS VCETLTQKRA SDPGNDDLSL FLLIKTEVMD 660
  661 TLLKALDDYS VDNRGDVGSW VREAAVHGLE KCTYILCKKM ETYSEGDYND DTSSLFDSNL 720
  721 ATRLIGGMLK QGVEKMDKLR ETAAKVLQRI LYHKSVSVPH VPYREKLEEI LPNKANLQWA 780
  781 VPAFSFPRFV QLLKLRCYSK EVMSGLVISI GGLQDSLRKA SLVALLEYMR EGEAKDPKEQ 840
  841 QSRESALGDD ILWILQEYKK CDRVMVPCLQ TIEILFSSKI FLNQESYTFS FYAGVMDSLA 900
  901 IELRASKDFT KLKAGLAILG YIASVSHFIS TKAFSQLLSF LGHRYPMIRK AAAEQVYLAL 960
  961 LQNGILVTEE KMEKVIEIIS ESCWEADMET TKTQRLELCE LAGLDHEVVF KTRNRLVIKD1020
 1021 IAGNKSAADE NASYSSLVDS SGF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 83.0
Match: 2h4mA
Description: No description for 2h4mA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle