YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|30692913, gi|...
Organism: Arabidopsis thaliana
Length: 455 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30692913, gi|....

Description E-value Query
Range
Subject
Range
gi|83652657, gi|... - gi|83718832|ref|YP_442414.1| peptide chain release factor 2, programmed [Burkholderia thailandensis ...
431.0 [0..28] [443..52]

Back

Predicted Domain #1
Region A:
Residues: [1-76]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSMELTVLGP LAGRSFAIAG KPKLLLLRPT NLPLLRLSLP LSLPNFSSSS RFNSPIFAAQ  60
   61 ESNLSVSNEN ETSEWL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [77-455]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MQDFYTLRKD VEIASARVEE IRASANLQQL EQEITNLESK ATDTSFWDDR TKAQETLSSL  60
   61 NDLKDRMRLL SEFKTMVEDA ETIVKLTEEM DSTDVSLLEE AMGIIKELNK SLDKFELTQL 120
  121 LSGPYDKEGA VVYITAGAGG TDAQDWADML LRMYMRWGEK QRYKTKVVEM SNGEEAGIKS 180
  181 ATLEIEGRYA YGYISGEKGT HRIVRQSPFN SKGLRQTSFS GVEVMPLLPE EAVGIEIPEE 240
  241 DLDISFTRAG GKGGQNVNKV ETAVRITHIP TGVAVRCTEE RSQLANKTRA LIRLKAKLMV 300
  301 IAEEQRATEI KEIRGDAVKA EWGQQIRNYV FHPYKLVKDV RTGHETSDIT SVMDGDLDPF 360
  361 IKAYLKHKYT LAMASAVTN

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 116.0
Match: 1ml5Z
Description: 70S ribosome functional complex
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle