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View Structure Prediction Details

Protein: gi|28416463, gi|...
Organism: Arabidopsis thaliana
Length: 532 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|28416463, gi|....

Description E-value Query
Range
Subject
Range
gi|27882022 - gi|27882022|gb|AAH43851.1| MGC53677 protein [Xenopus laevis]
318.0 [0..14] [312..1]

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Predicted Domain #1
Region A:
Residues: [1-230]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKRNRVPPA EQALPIEEDC KSLIKKLASC KQSIRDRSLR TVLRTWLPEQ TEISDEDMKK  60
   61 LWQGIFYCVW HADKSLYQSE LIDRLSSALQ SLPLPLSIHY FTVFLFTMRR EWSRIDRLRL 120
  121 DKFYLLIRRF LHGFFSLIDS NSWDLEFTRR LMGILFDGTL LADDKFQGNG VNYHITSAFV 180
  181 EELRPFLPLR KEVLELLFAP FVKIMGVVND KILVGKIKSN LFDELLKMGK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [231-417]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KLLIIKQSGD DAVPEDDDVV VLGSIALSME FAKRFYELGS SPECHQGNRK LIFALHKEFL  60
   61 QLEKDMSSSS IEVSIVEASR PGNDEVPESV PVSESNTNVV SKSKKIVANG SSSKKKGLKK 120
  121 CSKTKKDSVK KGAVMDSVVD LGNKDESFDE TMISDLRQEF EKIASEMSPS KSEVASVCDV 180
  181 AEPVSVS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [418-532]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KKTKKRKREN KGEEQVSTVN RDAAETSLAG PSSEKSSKRV RFAMKNNLVW KPHCPLPPQD  60
   61 LRCPPSATPR GSALKQGIPA GPVRELASRK TKKKVKPAAR RGVKSIKNLK KKLSP

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle