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View Structure Prediction Details

Protein: F8H_ARATH
Organism: Arabidopsis thaliana
Length: 469 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for F8H_ARATH.

Description E-value Query
Range
Subject
Range
gi|10177241 - gi|10177241|dbj|BAB10615.1| unnamed protein product [Arabidopsis thaliana]
446.0 [0..1] [469..1]

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Predicted Domain #1
Region A:
Residues: [1-82]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLDIKKPNI TKTKKKKTGF VVKMQLNNNR GGNKRNIFIF FFFRNYYTWI LWFCLSLYFF  60
   61 TSYFSVEDQS SPSSIRLLSN HK

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [83-225]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSSSLPSRAL IESSAIKTTS IGLFTGMKIY VYDLPASYND DWVTASDRCA SHLFAAEVAI  60
   61 HRALLSSDVR TLDPDEADYF FVPVYVSCNF STSNGFPSLS HARSLLSSAV DFLSDHYPFW 120
  121 NRSQGSDHVF VASHDFGACF HAM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [226-321]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EDMAIEEGIP KFMKRSIILQ TFGVKYKHPC QEVEHVVIPP YIPPESVQKA IEKAPVNGRR  60
   61 DIWAFFRGKM EVNPKNISGR FYSKGVRTAI LKKFGG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [322-469]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RRRFYLNRHR FAGYRSEIVR SVFCLCPLGW APWSPRLVES AVLGCVPVVI ADGIQLPFSE  60
   61 TVQWPEISLT VAEKDVRNLR KVLEHVAATN LSAIQRNLHE PVFKRALLYN VPMKEGDATW 120
  121 HILESLWRKL DDRSYRRSRV LSQREVDM

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle