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View Structure Prediction Details

Protein: TDX_ARATH
Organism: Arabidopsis thaliana
Length: 380 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for TDX_ARATH.

Description E-value Query
Range
Subject
Range
gi|48892684, gi|... - gi|71675161|ref|ZP_00672907.1| Peptidase S1, chymotrypsin:TPR repeat [Trichodesmium erythraeum IMS10...
224.0 [0..42] [355..288]

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Predicted Domain #1
Region A:
Residues: [1-256]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVDAIQVAEL RRFVEQLKLN PSILHDPSLV FFKEYLRSLG AQVPKIEKTE RDYEDKAETK  60
   61 PSFSPKHDDD DDDIMESDVE LDNSDVVEPD NEPPQPMGDP TAEVTDENRD DAQSEKSKAM 120
  121 EAISDGRFDE AIEHLTKAVM LNPTSAILYA TRASVFLKVK KPNAAIRDAN VALQFNSDSA 180
  181 KGYKSRGMAK AMLGQWEEAA ADLHVASKLD YDEEIGTMLK KVEPNAKRIE EHRRKYQRLR 240
  241 KEKELQRAER ERRKQQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 16.69897
Match: 2gw1A
Description: No description for 2gw1A was found.

Predicted Domain #2
Region A:
Residues: [257-380]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EAQEREAQAA LNDGEVISIH STSELEAKTK AAKKASRLLI LYFTATWCGP CRYMSPLYSN  60
   61 LATQHSRVVF LKVDIDKAND VAASWNISSV PTFCFIRDGK EVDKVVGADK GSLEQKIAQH 120
  121 SSSK

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 18.0
Match: 1ti3A
Description: Solution structure of the Thioredoxin h1 from poplar, a CPPC active site variant
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 0.142133664747919 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle