YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: PFPB1_ARATH
Organism: Arabidopsis thaliana
Length: 566 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PFPB1_ARATH.

Description E-value Query
Range
Subject
Range
gi|3157931, gi|2... - gi|3157931|gb|AAC17614.1| Similar to pyrophosphate-dependent phosphofuctokinase beta subunit gb|Z328...
646.0 [0..1] [566..1]

Back

Predicted Domain #1
Region A:
Residues: [1-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPALAVTRD LTAVGSPENA PAKGRASVYS EVQSSRINNT LPLPSVLKGA FKIVEGPASS  60
   61 AAGNPDEIAK LFPGLYGQPS VAVVPDQDAP SSAPKLKIGV VLSGGQAPGG HNVISGLFDY 120
  121 LQERAKGSTF YGFKGGPAGI MKCKYVELNA EYIQPYRNQG GFDMICSGRD KIETPDQFKQ 180
  181 AEETAKKLDL DGLVVIGGDD SNTNACLLAE NFRSKNLKTR VIGCPKTIDG DLKCKEVPTS 240
  241 FGFDTACKIY SEMIGNVMID ARSTGKYYHF VRLMGRAASH ITLECALQTH PNITIIGEEV 300
  301 SAQKQTLKNV TDYMVDVICK RAELGYNYGV ILIPEGLIDF IPEVQELIAE LNEILANEVV 360
  361 DENGLWKKKL TEQSLKLFDL LPEAIQEQLM LERDPHGNVQ VAKIETEKML IQMVETELEK 420
  421 RKQAGAYKGQ FMGQSHFFGY EGRCGLPTNF DATYCYALGY GAGVLLNSGK TGLISSVGNL 480
  481 AAPVEEWTVG GTALTALMDV ERRHGKFKPV IKKAMVELEG APFKKFASLR EEWALKNRYI 540
  541 SPGPIQFTGP GSDSLSHTLL LELGAQ

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 158.0
Match: 1kzhA
Description: Pyrophosphate-dependent phosphofructokinase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.36206206719674 bayes_pls_golite062009
transferase activity 0.84629334577842 bayes_pls_golite062009
transferase activity, transferring phosphorus-containing groups 0.7560441622854 bayes_pls_golite062009
phosphotransferase activity, alcohol group as acceptor 0.72507583349345 bayes_pls_golite062009
kinase activity 0.58654139962588 bayes_pls_golite062009
carbohydrate kinase activity 0.52459627481184 bayes_pls_golite062009
phosphofructokinase activity 0.52213265030802 bayes_pls_golite062009
6-phosphofructokinase activity 0.379731437688011 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle