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View Structure Prediction Details

Protein: SLU7A_ARATH
Organism: Arabidopsis thaliana
Length: 535 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLU7A_ARATH.

Description E-value Query
Range
Subject
Range
gi|18408333 - gi|18408333|ref|NP_564859.1| SMP1 (swellmap 1); nucleic acid binding [Arabidopsis thaliana]
664.0 [0..1] [535..1]
SLU7_ORYSI - Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. indica GN=OsI_27673 PE=3 SV=2
SLU7_ORYSJ - Pre-mRNA-splicing factor SLU7 OS=Oryza sativa subsp. japonica GN=Os08g0127700 PE=2 SV=1
638.0 [0..1] [535..1]
gi|73954102 - gi|73954102|ref|XP_536446.2| PREDICTED: similar to step II splicing factor SLU7 [Canis familiaris]
627.0 [0..1] [535..67]
gi|76623713 - gi|76623713|ref|XP_883739.1| PREDICTED: similar to step II splicing factor SLU7 isoform 3 [Bos tauru...
617.0 [0..1] [535..20]
gi|123980268, gi... - gi|123995081|gb|ABM85142.1| step II splicing factor SLU7 [synthetic construct], gi|123980268|gb|ABM8...
gi|14714952 - gi|14714952|gb|AAH10634.1| SLU7 splicing factor homolog (S. cerevisiae) [Homo sapiens]
614.0 [0..1] [535..20]

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Predicted Domain #1
Region A:
Residues: [1-184]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATASVAFKS REDHRKQIEL EEARKAGLAP AEVDEDGKEI NPHIPQYMSS APWYLNSEKP  60
   61 SLKHQRKWKS DPNYTKSWYD RGAKIFQAEK YRKGACQNCG AMTHTAKACM DRPRKIGAKY 120
  121 TNMNIAPDEK IESFELDYDG KRDRWNGYDP STYHRVIDLY EAKEDARKKY LKEQQLKKLE 180
  181 EKNN

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [185-309]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEKGDDANSD GEEDEDDLRV DEAKVDESRQ MDFAKVEKRV RTTGGGSTGT VRNLRIREDT  60
   61 AKYLLNLDVN SAHYDPKTRS MREDPLPDAD PNDKFYLGDN QYRNSGQALE FKQLNIHSWE 120
  121 AFDKG

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [310-535]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QDMHMQAAPS QAELLYKSFQ VAKEKLKSQT KDTIMDKYGN AATEDEIPME LLLGQSERQV  60
   61 EYDRAGRIIK GQEVILPKSK YEEDVHANNH TSVWGSYWKD HQWGYKCCQQ IIRNSYCTGS 120
  121 AGIEAAEAAL DLMKANIARK EATEESPKKV EEKRMASWGT DIPEDLELNE EALANALKKE 180
  181 DLSRREEKDE RKRKYNVKYN NDVTPEEMEA YRMKRVHHED PMKDFL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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