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View Structure Prediction Details

Protein: AHK2_ARATH
Organism: Arabidopsis thaliana
Length: 1176 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for AHK2_ARATH.

Predicted Domain #1
Region A:
Residues: [1-270]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSITCELLNL TSKKAKKSSS SDKKWLKKPL FFLILCGSLV IVLVMFLRLG RSQKEETDSC  60
   61 NGEEKVLYRH QNVTRSEIHD LVSLFSDSDQ VTSFECHKES SPGMWTNYGI TCSLSVRSDK 120
  121 QETRGLPWNL GLGHSISSTS CMCGNLEPIL QQPENLEEEN HEEGLEQGLS SYLRNAWWCL 180
  181 ILGVLVCHKI YVSHSKARGE RKEKVHLQEA LAPKKQQQRA QTSSRGAGRW RKNILLLGIL 240
  241 GGVSFSVWWF WDTNEEIIMK RRETLANMCD 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [271-439]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ERARVLQDQF NVSLNHVHAL SILVSTFHHG KIPSAIDQRT FEEYTERTNF ERPLTSGVAY  60
   61 ALKVPHSERE KFEKEHGWAI KKMETEDQTV VQDCVPENFD PAPIQDEYAP VIFAQETVSH 120
  121 IVSVDMMSGE EDRENILRAR ASGKGVLTSP FKLLKSNHLG VVLTFAVYD

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 33.677781
Match: PF03924.5
Description: No description for PF03924.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [440-566]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSLPPDATEE QRVEATIGYL GASYDMPSLV EKLLHQLASK QTIAVDVYDT TNTSGLIKMY  60
   61 GSEIGDISEQ HISSLDFGDP SRNHEMHCRF KHKLPIPWTA ITPSILVLVI TFLVGYILYE 120
  121 AINRIAT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 3.69897
Match: 2r78A
Description: No description for 2r78A was found.

Predicted Domain #4
Region A:
Residues: [567-874]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VEEDCQKMRE LKARAEAADI AKSQFLATVS HEIRTPMNGV LGMLKMLMDT DLDAKQMDYA  60
   61 QTAHGSGKDL TSLINEVLDQ AKIESGRLEL ENVPFDMRFI LDNVSSLLSG KANEKGIELA 120
  121 VYVSSQVPDV VVGDPSRFRQ IITNLVGNSI KFTQERGHIF ISVHLADEVK EPLTIEDAVL 180
  181 KQRLALGCSE SGETVSGFPA VNAWGSWKNF KTCYSTESQN SDQIKLLVTV EDTGVGIPVD 240
  241 AQGRIFTPFM QADSSTSRTY GGTGIGLSIS KRLVELMQGE MGFVSEPGIG STFSFTGVFG 300
  301 KAETNTSI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 43.045757
Match: 2c2aA
Description: Structure of the entire cytoplasmic portion of a sensor histidine kinase protein
Matching Structure (courtesy of the PDB):

Predicted Domain #5
Region A:
Residues: [875-1176]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TKLERFDLAI QEFTGLRALV IDNRNIRAEV TRYELRRLGI SADIVSSLRM ACTCCISKLE  60
   61 NLAMILIDKD AWNKEEFSVL DELFTRSKVT FTRVPKIFLL ATSATLTERS EMKSTGLIDE 120
  121 VVIKPLRMSV LICCLQETLV NGKKRQPNRQ RRNLGHLLRE KQILVVDDNL VNRRVAEGAL 180
  181 KKYGAIVTCV ESGKAALAML KPPHNFDACF MDLQMPEMDG FEATRRVREL EREINKKIAS 240
  241 GEVSAEMFCK FSSWHVPILA MTADVIQATH EECMKCGMDG YVSKPFEEEV LYTAVARFFE 300
  301 PC

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 30.39794
Match: 1w25A
Description: Response regulator PleD in complex with c-diGMP
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle