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View Structure Prediction Details

Protein: gi|30693405, gi|...
Organism: Arabidopsis thaliana
Length: 214 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30693405, gi|....

Description E-value Query
Range
Subject
Range
gi|19698361, gi|... - gi|19698369|gb|AAL93110.1|AF414939_1 holocarboxylase synthetase hcs2.b [Arabidopsis thaliana], gi|19...
223.0 [0..1] [210..1]

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Predicted Domain #1
Region A:
Residues: [1-214]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLFLISFSNF SEIPVGSVCV SDIQLKGRGR TKNVWESPKG CLMYSFTLEM EDGRVVPLIQ  60
   61 YVVSLAVTEA VKDVCDKKGL SYNDVKIKWP NDLYLNGLKI GGILCTSTYR SRKFLVSVGV 120
  121 GLNVDNEQPT TCLNAVLKDV CPPSNLLKRE EILGAFFKKF ENFFDLFMEQ GFKSLEELYY 180
  181 RTWLHSGQRV IAEEKNEDQV VQNVVTIQLL EMTM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 50.0
Match: 1biaA
Description: THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.46366406733797 bayes_pls_golite062009
ligase activity 1.22215897446525 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.92307591122679 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.92307591122679 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.92307153294189 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle