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View Structure Prediction Details

Protein: gi|19698373, gi|...
Organism: Arabidopsis thaliana
Length: 297 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|19698373, gi|....

Description E-value Query
Range
Subject
Range
gi|19698365 - gi|19698365|gb|AAL93108.1|AF414937_1 holocarboxylase synthetase 1 [Arabidopsis thaliana]
315.0 [0..1] [293..39]

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Predicted Domain #1
Region A:
Residues: [1-297]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDIDASCSLV LYGKSSVETD TATRLKNNNV LKLPDNSKVS IFLQSEIKNL VRDDDSSFNL  60
   61 SLFMNSISTH RFGRFLIWSP YLSSTHDVVS HNFSEIPVGS VCVSDIQLKG RGRTKNVWES 120
  121 PKGCLMYSFT LEMEDGRVVP LIQYVVSLAV TEAVKDVCDK KGLSYNDVKI KWPNDLYLNG 180
  181 LKIGGILCTS TYRSRKFLVS VGVGLNVDNE QPTTCLNAVL KDVCPPSNLL KREEILGAFF 240
  241 KKFENFFDLF MEQGFKSLEE LYYRTWLHSG QRVIAEEKNE DQVVQNVVTI QLLEMTM

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 64.221849
Match: 1biaA
Description: THE E. COLI BIOTIN HOLOENZYME SYNTHETASE(SLASH)BIO REPRESSOR CRYSTAL STRUCTURE DELINEATES THE BIOTIN AND DNA-BINDING DOMAINS
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
catalytic activity 1.46366406733797 bayes_pls_golite062009
ligase activity 1.22215897446525 bayes_pls_golite062009
ligase activity, forming carbon-oxygen bonds 0.92307591122679 bayes_pls_golite062009
ligase activity, forming aminoacyl-tRNA and related compounds 0.92307591122679 bayes_pls_golite062009
aminoacyl-tRNA ligase activity 0.92307153294189 bayes_pls_golite062009
DNA binding 0.3118855114645 bayes_pls_golite062009

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle