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View Structure Prediction Details

Protein: gi|30690873, gi|...
Organism: Arabidopsis thaliana
Length: 625 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|30690873, gi|....

Description E-value Query
Range
Subject
Range
gi|19484068 - gi|19484068|gb|AAH23374.1| Kifc3 protein [Mus musculus]
333.0 [0..6] [408..15]

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Predicted Domain #1
Region A:
Residues: [1-269]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLISAEKGEI LIPQSPLSSE SVVPLVYTDV NVVPEHESNQ LEKSISNLEE EVFELKLKLK  60
   61 SLDEKRKQVL NKIIDTKGSI RVFCRVRPFL LTERRPIREP VSFGPDNVVI RSAGSSKEFE 120
  121 FDKVFHQSAT QEEVFGEVKP ILRSALDGHN VCVLAYGQTG TGKTFTMDGT SEQPGLAPRA 180
  181 IKELFNEASM DQTHSVTFRM SMLEIYMGNL KDLLSARQSL KSYEASAKCN LNIQVDSKGS 240
  241 VEIEGLTEVE VMDFTKARWW YNKGRRVRS

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 88.0
Match: 1gojA
Description: Kinesin
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [270-625]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TSWTNVNETS SRSHCLTRIT IFRRGDAVGS KTEVSKLWMI DLGGSERLLK TGAIGQTMDE  60
   61 GRAINLSLSA LGDVIAALRR KKGHVPYRNS KLTQILKDSL GTRSKVLMLV HISPRDEDVG 120
  121 ETICSLSFTK RARAVESNRG LTAELQKLRE KKISELEEEM EETQEGCKKI KARLQEVECL 180
  181 VNEHKKLFWI TNDKYLEDIE KKAISPLDHL KDTDATPISS DKLVKIRKSS GFVPRFMTST 240
  241 VASRQRQTMS EKEINAKAQS IRSVAKNLTQ FSTSQSLSLS DSRSKALLRR SYTKPLQAAA 300
  301 NSGTPPETPK RHIKDNSLQR KNMNDTSSPR SKMVTSSDPN VRAKLCHHKR RMSSLT

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 8.522879
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle