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View Structure Prediction Details

Protein: VHAA3_ARATH
Organism: Arabidopsis thaliana
Length: 821 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

No multiple sequence alignment data found for VHAA3_ARATH.

Predicted Domain #1
Region A:
Residues: [1-336]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAESGGGGGC CPPMDLMRSE TMQLVQLIVP MESAHLTVSY LGDLGLVQFK DLNSEKSPFQ  60
   61 RTYAAQIKRC GEMARKIRFF RDQMSKAGVP AKEMQGKEND IDLDDVEVKL GELEAELVEI 120
  121 NANNDKLQRS YNELMEYKLV LQKAGEFFSS AHRSAADQQR ETESQQAGED LLESPLLQEE 180
  181 KSIDSTKQVK LGFLTGLVPR EKSMVFERIL FRATRGNIFI RQTVIEEPVI DPNSGEKAEK 240
  241 NVFVVFYSGE RAKSKILKIC EAFGANRYPF SEDLGRQAQM ITEVSGRLSE LKTTIDAGLG 300
  301 QRNILLQTIG DKFELWNLKV RKEKAIYHTL NMLSLD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 24.154902
Match: 1i84S
Description: Heavy meromyosin subfragment
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [337-406]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTKKCLVAEG WSPVFASREI QDALQRAAVD SNSQVGSIFQ VLRTKESPPT YFRTNKFTSA  60
   61 IQEIVDAYGV 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 4.09691
Match: 1dg3A
Description: Interferon-induced guanylate-binding protein 1 (GBP1), C-terminal domain; Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain
Matching Structure (courtesy of the PDB):

Predicted Domain #3
Region A:
Residues: [407-671]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 AKYQEANPGV FTIVTFPFLF AVMFGDWGHG ICILLATMYL ILKEKKLASQ KLGDIMEMAF  60
   61 GGRYVILMMS LFSIYTGLIY NEFFSIPFPL FAPSAYDCRD VSCSEATTIG LIKVRDTYPF 120
  121 GLDPVWHGSR SELPFLNSLK MKMSILLGVS QMNLGIIMSY FNARFFKSSV NIWFQFIPQM 180
  181 IFLNSLFGYL SVLIIIKWCT GSQADLYHVM IYMFLSPMDE LGENQLFPHQ KTLQLVLLFL 240
  241 ALVSVPCMLL PKPFILKKQH EARHQ

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [672-821]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQAYAPLDET DESLHVETNG GGSHGHEEFE FSEIFVHQLI HTIEFVLGAV SNTASYLRLW  60
   61 ALSLAHSELS SVFYEKVLLL AWGYNNPLIL IVGVLVFIFA TVGVLLVMET LSAFLHALRL 120
  121 HWVEFQNKFY EGDGYKFAPF TFIFTANEDE 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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