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View Structure Prediction Details

Protein: RPN2_ARATH
Organism: Arabidopsis thaliana
Length: 691 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RPN2_ARATH.

Description E-value Query
Range
Subject
Range
gi|36049 - gi|36049|emb|CAA68393.1| unnamed protein product [Homo sapiens]
738.0 [0..11] [687..9]

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Predicted Domain #1
Region A:
Residues: [1-178]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMAGGNVRFL VLILAVAICG AASVFQPISD SHRSAALDVF VPVDGSYKSL EEAYEALKTL  60
   61 EILGIDKKSD LSSKTCENVV KVLQSSSSTL KDAFYALNVN GILKCKIGEA GPKDIVSQLQ 120
  121 AGVKDAKLLL DFYYSVRGLV LAKEQFPGTH ISLGDAEAIF RSIKSLSQSD GRWRYSSN

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [179-368]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NPESSTFAAG LAYETLAGVI SLAPSEFDPS LIQSVKTGIL KLSDSIQKYD DGTFYFDEKS  60
   61 VDASQGPIST TASVIRGLTS FAASESTGLN LPGDKIVGLA KFFLGVGIPG DAKDFFNQID 120
  121 ALACLEDNKF SVPLILSLPS TVISLTKKEP LKVKVSTVLG SKAPALSVKL TQALSSKSVD 180
  181 SSVINNQELK 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [369-521]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 FDADSATYFL DSFPKNFDIG KYTFVFKIVL DESAHEKVYI TEAQTKVPIA ATGAISIENA  60
   61 EIAVLDSDIG SVESQKKLDL TKDGAVSLSA NHLQKLRLSF QLTTPLGNAF KPHQAFFKLK 120
  121 HESQVEHIFL VKTSGKKSEL VLDFLGLVEK LYY

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [522-691]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LSGKYEIQLT IGDASMENSL LSNIGHIELD LPERPEKATR PPLQSTEPYS RYGPKAEISH  60
   61 IFRIPEKLPA KQLSLVFLGV IVLPFIGFLI GLTRLGVNIK SFPSSTGSAI SALLFHCGIG 120
  121 AVLLLYVLFW LKLDLFTTLK ALSLLGVFLL FVGHRTLSQL ASASNKLKSA 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle