YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|18650600, gi|...
Organism: Arabidopsis thaliana
Length: 430 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|18650600, gi|....

Description E-value Query
Range
Subject
Range
gi|30691732 - gi|30691732|ref|NP_849516.1| aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative [...
308.0 [0..1] [430..1]

Back

Predicted Domain #1
Region A:
Residues: [1-195]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLLRLLLVV VVLHLSAVAG DDAIVSRFQE YLRINTVQPN PEYYKAVDFI ISQAKPLSLE  60
   61 SQTIEFVKGK PLLLLKWVGS DPTLPAFLLN SHTDVVPFED SKWTHHPLQA HMDHHGDIYA 120
  121 RGSQDMKCVG MQYLEAIRKL QASGFKPLRS VYLSFVPDEE IGGHDGAEKF AESQLFKSLN 180
  181 IAIVLDEGLP SPTES

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 37.522879
Match: 1q7lA
Description: Zn-binding domain of the T347G mutant of human aminoacylase-I
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [196-335]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YRVFYGERSP WWLVIKAKGP PGHGAKLYDN SAMENLLKSI ESIRRFRASQ FDLLKAGGIA  60
   61 EGDVVSVNMA FLKAGTPSPT GFVMNLQPSE AEAGFDIRVP PSVDAEALER RLVEEWAPAA 120
  121 RNMSFEFKQK LTGKQFLTAA 

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 3.66
Match: 1ysjA
Description: Crystal Structure of Bacillus Subtilis YXEP Protein (APC1829), a Dinuclear Metal Binding Peptidase from M20 Family
Matching Structure (courtesy of the PDB):

Predicted functions:

Term Confidence Notes
peptidase activity 3.2460337099697 bayes_pls_golite062009
hydrolase activity 2.89801951009786 bayes_pls_golite062009
peptidase activity, acting on L-amino acid peptides 2.58805472741431 bayes_pls_golite062009
catalytic activity 1.84228605319441 bayes_pls_golite062009
exopeptidase activity 0.574424638244179 bayes_pls_golite062009
binding 0.477837256878116 bayes_pls_golite062009

Predicted Domain #3
Region A:
Residues: [336-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DDSNPWWGLL ENAVKEAGGR TSKPEIFPAS TDARYFRKAG VPAFGFSPIS NTPSLLHDHN  60
   61 EYLGKAEYLK GIEVYVSIIK AYASYESKSG SRDEL

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.0
Match: 1q7lB
Description: Zn-binding domain of the T347G mutant of human aminoacylase-I
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle