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View Structure Prediction Details

Protein: SLAH2_ARATH
Organism: Arabidopsis thaliana
Length: 519 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLAH2_ARATH.

Description E-value Query
Range
Subject
Range
gi|7486965, gi|7... - pir||T02898 hypothetical protein T13J8.80 - Arabidopsis thaliana, gi|7269651|emb|CAB79599.1| putativ...
477.0 [0..1] [519..1]

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Predicted Domain #1
Region A:
Residues: [1-174]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNNPRSVSPL VSPANHSDLL ENQRQSGSGD FSRLEKRIGA RKMKFHSKSM PRGAMFLDQE  60
   61 ASRNFHDKRY DLFRTMSGKL ERQISNLRGK PTESSLQDHK EITESLTADR YFDALQGPEL 120
  121 ETLKEKEKIV LPEDKTWPFL LRFPITSYGM CLGVSSQAIM WKTLATTEAE KFLH

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [175-519]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 VTQVINHVLW WISLLLLLAV SITYLFKTIL FFEAVRREFR HPIRVNFFFA PLISILFLAL  60
   61 GIPHSIISHL PSTLWYFLMA PILFLEMKIY GQWMSGGQRR LSKVANPTNH LSIVGNFAGA 120
  121 LLGASMGLKE GPIFFFAIGL AYYLVLFVTL YQRLPTNETL PKELHPVFFL FVAAPAVASM 180
  181 AWTKISASFD LGSRLAYFIS LFLYFSLVCR INLFRGFKFS LAWWAYTFPM TAVASATIKY 240
  241 SDEVTGVATK ILSVVMSGAA TLTVIAVLGL TVMHAFVQRD LFPNDVVIAI SAEQPKQKRW 300
  301 FKHLTKESYG NNERCPKILD PEDNQIDLES PPLVNVDSST VQNSN

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 0.96
Match: 2d57A
Description: Double layered 2D crystal structure of AQUAPORIN-4 (AQP4M23) at 3.2 a resolution by electron crystallography
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle