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View Structure Prediction Details

Protein: VSP55_ARATH
Organism: Arabidopsis thaliana
Length: 140 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for VSP55_ARATH.

Description E-value Query
Range
Subject
Range
gi|25518386, gi|... - gi|8920616|gb|AAF81338.1|AC007767_18 Contains similarity to a hypothetical protein F19I3.26 gi|74858...
194.0 [0..1] [139..1]

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Predicted Domain #1
Region A:
Residues: [1-140]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADVPGYLRT CLDMGKIAFL AILVSTGIVL QILACALFNN WWPMLSVIMY VLLPMPLLFF  60
   61 GGSDSTSLFN ESDNSWINAA KFLTGASAVG SVAIPSILKH AGLIGWGALA LDLSSYVVFL 120
  121 VAILGYICIG DASDNYYSYI 

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 56.21467
Match: PF04133.5
Description: No description for PF04133.5 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


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Created and Maintained by: Michael Riffle