YRC Public Data Repository - Protein Structure Prediction

Protein:	RL27A_RAT
Organism:	Rattus norvegicus
Length:	148 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RL27A_RAT.

Description	E-value	Query Range	Subject Range
gi\|67525973, gi\|... - gi\|67525973\|ref\|XP_661048.1\| hypothetical protein AN3444.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	196.0	[0..1]	[148..846]
gi\|109065734 - gi\|109065734\|ref\|XP_001106319.1\| PREDICTED: similar to ribosomal protein L27a [Macaca mulatta]	181.0	[0..1]	[148..1]
RL27A_MOUSE - 60S ribosomal protein L27a OS=Mus musculus GN=Rpl27a PE=1 SV=5	180.0	[0..1]	[148..1]
RL27A_BOVIN - 60S ribosomal protein L27a OS=Bos taurus GN=RPL27A PE=2 SV=3 gi\|73988818, gi\|... - gi\|73992191\|ref\|XP_866978.1\| PREDICTED: similar to ribosomal protein L27a isoform 2 [Canis familiari... gi\|149720018 - gi\|149720018\|ref\|XP_001504953.1\| PREDICTED: similar to ribosomal protein L27a-like [Equus caballus] tr\|G3I3W6\|G3I3W6... - 60S ribosomal protein L27a OS=Cricetulus griseus GN=H671_3g11227 PE=3 SV=1 ENSCJAT00000022853 - null	180.0	[0..1]	[148..1]
gi\|83638540 - gi\|83638540\|gb\|AAI09684.1\| Ribosomal protein L27a [Bos taurus]	179.0	[0..1]	[148..1]
ENSPTRT00000006317 - null RL27A_PONAB - 60S ribosomal protein L27a OS=Pongo abelii GN=RPL27A PE=2 SV=3 RL27A_PONPY - 60S ribosomal protein L27a - Pongo pygmaeus (Orangutan) RPL27A - ribosomal protein L27a	179.0	[0..1]	[148..1]
gi\|55627598, gi\|... - gi\|55627598\|ref\|XP_518819.1\| PREDICTED: similar to ribosomal protein L27a isoform 2 [Pan troglodytes...	178.0	[0..1]	[148..1]

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Predicted Domain #1

Region A:
Residues: [1-148]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSRLRKTRK LRGHVSHGHG RIGKHRKHPG GRGNAGGMHH HRINFDKYHP GYFGKVGMRH  60
   61 YHLKRNQSFC PTVNLDKLWT LVSEQTRVNA AKNKNGVAPI IDVVRSGYYK VLGKGKLPKQ 120
  121 PVIVKAKFFS RRAEEKIKGV GGACVLVA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	38.69897
Match:	1s1iV
Description:	Structure of the ribosomal 80S-eEF2-sordarin complex from yeast obtained by docking atomic models for RNA and protein components into a 11.7 A cryo-EM map. This file, 1S1I, Contains 60S subunit. The 40S Ribosomal Subunit Is In File 1S1H.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits