YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|125606481, gi...
Organism:	Oryza sativa Japonica Group
Length:	414 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|125606481, gi....

Description	E-value	Query Range	Subject Range
MED4_ARATH - Mediator of RNA polymerase II transcription subunit 4 OS=Arabidopsis thaliana GN=MED4 PE=1 SV=1	359.0	[0..8]	[392..9]
MED4_XENTR - Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus tropicalis GN=med4 PE=2 SV=1	244.0	[0..109]	[337..33]
ENST00000378594,... - Tax_Id=9606 Gene_Symbol=MED4 Mediator complex subunit 4, IPI:IPI00033546.3\|TREMBL:Q5T911\|ENSEMBL:ENS... gi\|114649590 - gi\|114649590\|ref\|XP_001151408.1\| PREDICTED: mediator of RNA polymerase II transcription, subunit 4 h...	243.0	[0..109]	[349..29]
gi\|55958229 - gi\|55958229\|emb\|CAI17019.1\| mediator complex subunit 4 [Homo sapiens]	243.0	[0..109]	[349..29]
gi\|109120699 - gi\|109120699\|ref\|XP_001100111.1\| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA p...	239.0	[0..109]	[349..51]
MED4_XENLA - Mediator of RNA polymerase II transcription subunit 4 OS=Xenopus laevis GN=med4 PE=2 SV=1	239.0	[0..100]	[337..24]
gi\|73959900 - gi\|73959900\|ref\|XP_854517.1\| PREDICTED: similar to Mediator complex subunit 4 (Mediator of RNA polym...	239.0	[0..109]	[349..78]
gi\|47208439 - gi\|47208439\|emb\|CAF91289.1\| unnamed protein product [Tetraodon nigroviridis]	239.0	[0..109]	[338..26]
MED4_DANRE - Mediator of RNA polymerase II transcription subunit 4 OS=Danio rerio GN=med4 PE=2 SV=1	238.0	[0..109]	[338..35]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMQSHHPSPA RLGLTASSPS LPPNPAAGNP TSSPPQGNPS AAAAVGAAAA AAPTLTTSPS  60
   61 LLPLLPPLPR AQALLQLISA LASNLFELSP SRAAWISAYR GSLPTFLPSP SS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [113-318]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 APPPPLPAPI SSTKEALSLL NTLQTQLFEA VAELQETLDL QDARARLARE ARAKDASILA  60
   61 FAKKLREAHH VLDRLVDDYA DYRRDPKRPR GAAAADDPEP VSDGDFGASL HSKLNLDDVL 120
  121 TYAHRISYTT FAPPEHGAGL PLRGALPPAP QENEMRMSQL YQFADLDVGV PKSQEAKERT 180
  181 AAEGDATPLF QPSPTQEAAV LPITVP

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [319-414]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 HPHGWRNGAL PLEIPLPPPG WKPGDPITLP PDGILAGVKG EEPRASVQQM PVVVPAMVPK  60
   61 AQEPIQVRHV DLDINNSSSS DEYSSDVGSS EEDDED

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits