YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Structure Prediction Details

Protein: gi|42568257, gi|...
Organism: Arabidopsis thaliana
Length: 549 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



[What does the above image mean?]


[Show Ginzu Version Information]


Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|42568257, gi|....

Description E-value Query
Range
Subject
Range
gi|9757939 - gi|9757939|dbj|BAB08427.1| GTPase activator protein of Rab-like small GTPases-like protein [Arabidop...
325.0 [0..65] [549..22]

Back

Predicted Domain #1
Region A:
Residues: [1-233]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMFPRLRLTK VFFSPIIAGK WIVFADGSSG GGVGRNGYYG GLWSSAVIPS NVGLAVAVTV  60
   61 MAVAVAFTVY SRRGSIGSPW SLRRRKRVLQ PKQWNAFFTE EGRLSDGGVK FLKKVRSGGV 120
  121 HPSIRPEVWP FLLGVYDLKS NKEERDSIRQ LKLTEYENLR RQCREIHERY ENVCDSKETA 180
  181 QSSNTEDSQV LESHDIEEVE SSTRTITVDE SEKLNSESIM QDENCEKSDV TTE

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.57
Match: 2g77A
Description: No description for 2g77A was found.

Predicted Domain #2
Region A:
Residues: [234-549]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DAAGNDSDST NPEETETSPF LANEEVESHN TVNQEKEISS PSSKPKSQAA DEDFMSTWQR  60
   61 IIRLDAVRAN DEWVPYSPTQ AAVSETKARG IAIQVGLNDY DHLEPCRIFH AARLVGILEA 120
  121 YAVYDPEIGY CQGMSDLLSP LIAVMEDDVL AFWCFVGFMS KARHNFRLDE VGIRRQLSMV 180
  181 SKIIKFKDIH LYRHLENLEA EDCFFVYRMV VVLFRRELTF EQTLCLWEVM WADQAAIRTG 240
  241 IAKATWGRIR LRAPPTEDLL LYAIAASVLQ RRKTIIEKYS GMDEIMKECN SMAGHLDVWK 300
  301 LLDDAHDLVV NLHDKI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 54.69897
Match: 2qfzA
Description: No description for 2qfzA was found.

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle