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View Structure Prediction Details

Protein: CIPKL_ARATH
Organism: Arabidopsis thaliana
Length: 416 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CIPKL_ARATH.

Description E-value Query
Range
Subject
Range
gi|20260304, gi|... - gi|22136500|gb|AAM91328.1| unknown protein [Arabidopsis thaliana], gi|20260304|gb|AAM13050.1| unknow...
369.0 [0..1] [416..1]

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Predicted Domain #1
Region A:
Residues: [1-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGLFGTKKIG KYEIGRTIGE GNFAKVKLGY DTTNGTYVAV KIIDKALVIQ KGLESQVKRE  60
   61 IRTMKLLNHP NIVQIHEVIG TKTKICIVME YVSGGQLSDR LGRQKMKESD ARKLFQQLID 120
  121 AVDYCHNRGV YHRDLKPQNL LLDSKGNLKV SDFGLSAVPK SGDMLSTACG SPCYIAPELI 180
  181 MNKGYSGAAV DVWSCGVILF ELLAGYPPFD DHTLPVLYKK ILRADYTFPP GFTGEQKRLI 240
  241 FNILDPNPLS RITLAEIIIK DSWFKIGYTP VYHQLSDSIK DNVAEINAAT ASSNFINAFQ 300
  301 IIAMSSDLDL SGLFEENDDK RYKTRI

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 74.09691
Match: 2qnjA
Description: No description for 2qnjA was found.

Predicted Domain #2
Region A:
Residues: [327-416]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GSKNTAQETI KKIEAAATYV SLSVERIKHF KVKIQPKEIR SRSSYDLLSA EVIEVTPTNC  60
   61 VIEISKSAGE LRLYMEFCQS LSSLLTAEVS 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 17.69897
Match: 2aaoA
Description: Regulatory apparatus of Calcium Dependent protein kinase from Arabidopsis thaliana
Matching Structure (courtesy of the PDB):

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle