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View Structure Prediction Details

Protein: QSOX1_ARATH
Organism: Arabidopsis thaliana
Length: 528 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for QSOX1_ARATH.

Description E-value Query
Range
Subject
Range
gi|6899648, gi|2... - gi|6899648|gb|AAF31025.1|AC012189_7 Contains Thioredoxin domain PF|00085. ESTs gb|T42351, gb|AA0424...
412.0 [0..16] [510..16]

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Predicted Domain #1
Region A:
Residues: [1-430]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLIHLFLLL GLLSLEAAAS FSPGSRSILR DIGSNVADQK DNAIELNATN FDSVFQDSPA  60
   61 KYAVLEFFAH WCPACRNYKP HYEKVARLFN GADAVYPGVV LMTRVDCAIK MNVKLCDKFS 120
  121 INHYPMLFWA PPKRFVGGSW GPKQEKNEIS VVNEWRTADL LLNWINKQIG SSYGLDDQKL 180
  181 GNLLSNISDQ EQISQAIFDI EEATEEAFDI ILAHKAIKSS ETSASFIRFL QLLVAHHPSR 240
  241 RCRTGSAEIL VNFDDICPSG ECSYDQESGA KDSLRNFHIC GKDVPRGYYR FCRGSKNETR 300
  301 GFSCGLWVLM HSLSVRIEDG ESQFAFTAIC DFINNFFMCD DCRRHFHDMC LSVKTPFKKA 360
  361 RDIALWLWST HNKVNERLKK DEDSLGTGDP KFPKMIWPPK QLCPSCYLSS TEKNIDWDHD 420
  421 QVYKFLKKYY 

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 27.0
Match: 2b5eA
Description: Crystal Structure of Yeast Protein Disulfide Isomerase
Matching Structure (courtesy of the PDB):

Predicted Domain #2
Region A:
Residues: [431-528]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GQKLVSVYKK NGESVSKEEV IAAAEEMAVP TNALVVPVGA ALAIALASCA FGALACYWRT  60
   61 QQKNRKYNYN PHYLKRYNSN YMVMNTFSNT ESEREKER

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle