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View Structure Prediction Details

Protein: gi|195934741
Organism: synthetic construct
Length: 687 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|195934741.

Description E-value Query
Range
Subject
Range
gi|114594179 - gi|114594179|ref|XP_001152494.1| PREDICTED: hypothetical protein isoform 5 [Pan troglodytes]
969.0 [0..1] [672..1]
gi|109074438 - gi|109074438|ref|XP_001099342.1| PREDICTED: similar to SDA1 domain containing 1 isoform 3 [Macaca mu...
941.0 [0..1] [687..1]
SDA1_MOUSE - Protein SDA1 homolog OS=Mus musculus GN=Sdad1 PE=1 SV=1
931.0 [0..1] [687..1]
SDA1_RAT - Protein SDA1 homolog OS=Rattus norvegicus GN=Sdad1 PE=1 SV=1
gi|55741772 - ref|NP_001006959.1| SDA1 domain containing 1 [Rattus norvegicus]
923.0 [0..1] [687..1]
gi|50746659 - gi|50746659|ref|XP_420597.1| PREDICTED: similar to SDA1 domain containing 1 [Gallus gallus]
921.0 [0..1] [686..1]
gi|74001871 - gi|74001871|ref|XP_535608.2| PREDICTED: similar to SDA1 domain containing 1 [Canis familiaris]
895.0 [0..1] [687..1]
SDA1_DANRE - Protein SDA1 homolog OS=Danio rerio GN=sdad1 PE=2 SV=1
880.0 [0..1] [684..1]

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Predicted Domain #1
Region A:
Residues: [1-112]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNRNNNKLP SNLPQLQNLI KRDPPAYIEE FLQQYNHYKS NVEIFKLQPN KPSKELAELV  60
   61 MFMAQISHCY PEYLSNFPQE VKDLLSCNHT VLDPDLRMTF CKALILLRNK NL

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2
Region A:
Residues: [113-346]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 INPSSLLELF FELFRCHDKL LRKTLYTHIV TDIKNINAKH KNNKVNVVLQ NFMYTMLRDS  60
   61 NATAAKMSLD VMIELYRRNI WNDAKTVNVI TTACFSKVTK ILVAALTFFL GKDEDEKQDS 120
  121 DSESEDDGPT ARDLLVQYAT GKKSSKNKKK LEKAMKVLKK QKKKKKPEVF NFSAIHLIHD 180
  181 PQDFAEKLLK QLECCKERFE VKMMLMNLIS RLVGIHELFL FNFYPFLQRF LQPH

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [347-451]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 QREVTKILLF AAQASHHLVP PEIIQSLLMT VANNFVTDKN SGEVMTVGIN AIKEITARCP  60
   61 LAMTEELLQD LAQYKTHKDK NVMMSARTLI HLFRTLNPQM LQKKF

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #4
Region A:
Residues: [452-687]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RGKPTEASIE ARVQEYGELD AKDYIPGAEV LEVEKEENAE NDEDGWESTS LSEEEDADGE  60
   61 WIDVQHSSDE EQQEISKKLN SMPMEERKAK AAAISTSRVL TQEDFQKIRM AQMRKELDAA 120
  121 PGKSQKRKYI EIDSDEEPRG ELLSLRDIER LHKKPKSDKE TRLATAMAGK TDRKEFVRKK 180
  181 TKTNPFSSST NKEKKKQKNF MMMRYSQNVR SKNKRSFREK QLALRDALLK KRKRMK

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle