YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|253723004, gi...
Organism:	Escherichia coli
Length:	170 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|253723004, gi....

Description	E-value	Query Range	Subject Range
gi\|190907388, gi... - gi\|191172289\|ref\|ZP_03033831.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... PAGP_ECOL5 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pagP PE=3 SV...	283.0	[0..2]	[162..26]
gi\|238861972, gi... - gi\|238899901\|ref\|YP_002925697.1\| palmitoyl transferase for Lipid A [Escherichia coli BW2952], gi\|238... gi\|242376399, gi... - gi\|251784126\|ref\|YP_002998430.1\| hypothetical protein B21_00581 [Escherichia coli BL21], gi\|24237639... gi\|253774391, gi... - gi\|254287493\|ref\|YP_003053241.1\| palmitoyl transferase for Lipid A [Escherichia coli BL21(DE3)], gi\|... gi\|253972606, gi... - gi\|254160705\|ref\|YP_003043813.1\| palmitoyl transferase for Lipid A [Escherichia coli B str. REL606],... gi\|218359933, gi... - gi\|218553165\|ref\|YP_002386078.1\| palmitoyl transferase [Escherichia coli IAI1], gi\|218359933\|emb\|CAQ... gi\|169888038, gi... - gi\|170080304\|ref\|YP_001729624.1\| palmitoyl transferase for Lipid A [Escherichia coli str. K-12 subst... gi\|188490713, gi... - gi\|75514716\|ref\|ZP_00736971.1\| hypothetical protein Ecol5_01001492 [Escherichia coli 53638], gi\|1884... gi\|89107491, gi\|... - gi\|89107491\|ref\|AP_001271.1\| palmitoyl transferase for Lipid A [Escherichia coli str. K-12 substr. W... CRCA_ECOLI - Protein crcA - Escherichia coli gi\|194437400, gi... - gi\|83586943\|ref\|ZP_00925573.1\| hypothetical protein Ecol1_01001684 [Escherichia coli 101-1], gi\|1944... gi\|75189661, gi\|... - gi\|75189661\|ref\|ZP_00702928.1\| hypothetical protein EcolE_01002949 [Escherichia coli E24377A], gi\|15... gi\|157160118, gi... - gi\|75194806\|ref\|ZP_00704876.1\| hypothetical protein EcolH_01000588 [Escherichia coli HS], gi\|1571601... gi\|75210750, gi\|... - gi\|75210750\|ref\|ZP_00710882.1\| hypothetical protein EcolB_01002061 [Escherichia coli B171], gi\|19442... gi\|190902583, gi... - gi\|75229493\|ref\|ZP_00716040.1\| hypothetical protein EcolB7_01002246 [Escherichia coli B7A], gi\|19116... gi\|193063462, gi... - gi\|75258641\|ref\|ZP_00730048.1\| hypothetical protein EcolE2_01001587 [Escherichia coli E22], gi\|19306... gi\|218350795, gi... - gi\|218694063\|ref\|YP_002401730.1\| palmitoyl transferase [Escherichia coli 55989], gi\|218350795\|emb\|CA... EG12180 - phospholipid:lipid A palmitoyltransferase / Phospholipid:lipid A palmitoyltransferase; confers resis... EG12180 - phospholipid:lipid A palmitoyltransferase / Phospholipid:lipid A palmitoyltransferase; confers resis...	282.0	[0..2]	[162..26]
PAGP_ECOL6 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O6 GN=pagP PE=3 SV=1 PAGP_ECOL6 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=... gi\|227838484, gi... - gi\|227884398\|ref\|ZP_04002203.1\| palmitoyl transferase for Lipid A [Escherichia coli 83972], gi\|22783... gi\|218368981, gi... - gi\|218698995\|ref\|YP_002406624.1\| palmitoyl transferase [Escherichia coli IAI39], gi\|218368981\|emb\|CA...	282.0	[0..2]	[162..26]
gi\|24112077, gi\|... - gi\|24112077\|ref\|NP_706587.1\| palmitoyl transferase for Lipid A [Shigella flexneri 2a str. 301], gi\|2... gi\|30040433, gi\|... - gi\|30062188\|ref\|NP_836359.1\| palmitoyl transferase for Lipid A [Shigella flexneri 2a str. 2457T], gi... PAGP_SHIF2 - Lipid A palmitoyltransferase PagP OS=Shigella flexneri serotype X (strain 2002017) GN=pagP PE=3 SV=2 PAGP_SHIFL - Lipid A palmitoyltransferase PagP OS=Shigella flexneri GN=pagP PE=3 SV=1 PAGP_SHIF8 - Lipid A palmitoyltransferase PagP OS=Shigella flexneri serotype 5b (strain 8401) GN=pagP PE=3 SV=2	281.0	[0..2]	[162..26]
gi\|194432567, gi... - gi\|83570454\|ref\|ZP_00921899.1\| hypothetical protein Sdys1_01001421 [Shigella dysenteriae 1012], gi\|1...	281.0	[0..2]	[162..26]
gi\|209400211, gi... - gi\|209400211\|ref\|YP_002269258.1\| antimicrobial peptide resistance and lipid A acylation protein PagP... gi\|15800337, gi\|... - gi\|15800337\|ref\|NP_286349.1\| palmitoyl transferase for Lipid A [Escherichia coli O157:H7 EDL933], gi... gi\|208737469, gi... - gi\|208823276\|ref\|ZP_03263594.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|208815106, gi... - gi\|208815106\|ref\|ZP_03256285.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|208727285, gi... - gi\|208807484\|ref\|ZP_03249821.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|217325037, gi... - gi\|217325037\|ref\|ZP_03441121.1\| antimicrobial peptide resistance and lipid A acylation protein PagP ... gi\|168774687, gi... - gi\|187769784\|gb\|EDU33628.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|168770226, gi... - gi\|189360857\|gb\|EDU79276.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|168760227, gi... - gi\|189369127\|gb\|EDU87543.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|168754725, gi... - gi\|189358110\|gb\|EDU76529.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|195936172 - gi\|195936172\|ref\|ZP_03081554.1\| palmitoyl transferase for Lipid A [Escherichia coli O157:H7 str. EC4... gi\|189379383, gi... - gi\|189379383\|gb\|EDU97799.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|189373743, gi... - gi\|189373743\|gb\|EDU92159.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|189002978, gi... - gi\|189002978\|gb\|EDU71964.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|254591189, gi... - gi\|254791789\|ref\|YP_003076626.1\| palmitoyl transferase for Lipid A [Escherichia coli O157:H7 str. TW... gi\|188013581, gi... - gi\|188013581\|gb\|EDU51703.1\| antimicrobial peptide resistance and lipid A acylation protein PagP [Esc... gi\|15829915, gi\|... - gi\|15829915\|ref\|NP_308688.1\| palmitoyl transferase [Escherichia coli O157:H7 str. Sakai], gi\|1336011... PAGP_ECO57 - Lipid A palmitoyltransferase PagP OS=Escherichia coli O157:H7 GN=pagP PE=1 SV=1 gi\|209777236, gi... - pir\|\|A85562 hypothetical protein crcA [imported] - Escherichia coli (strain O157:H7, substrain EDL9...	281.0	[0..2]	[162..26]
gi\|110804728, gi... - gi\|110804728\|ref\|YP_688248.1\| palmitoyl transferase for Lipid A [Shigella flexneri 5 str. 8401], gi\|...	281.0	[0..2]	[162..34]
gi\|226898615, gi... - gi\|237707405\|ref\|ZP_04537886.1\| palmitoyl transferase for Lipid A [Escherichia sp. 3_2_53FAA], gi\|22... gi\|218364331, gi... - gi\|218557562\|ref\|YP_002390475.1\| palmitoyl transferase [Escherichia coli S88], gi\|218364331\|emb\|CAR0... gi\|117622841, gi... - gi\|117622841\|ref\|YP_851754.1\| palmitoyl transferase for Lipid A [Escherichia coli APEC O1], gi\|11551... PAGP_ECOUT - Lipid A palmitoyltransferase PagP OS=Escherichia coli (strain UTI89 / UPEC) GN=pagP PE=3 SV=1	281.0	[0..2]	[162..26]
PAGP_SHIBS - Lipid A palmitoyltransferase PagP OS=Shigella boydii serotype 4 (strain Sb227) GN=pagP PE=3 SV=1	280.0	[0..2]	[162..26]
gi\|24159100, gi\|... - gi\|24159101\|pdb\|1MM5\|A Chain A, Solution Nmr Structure Of The Outer Membrane Enzyme Pagp In Og Micel...	278.0	[0..2]	[164..2]

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Predicted Domain #1

Region A:
Residues: [1-170]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNADEWMTTF RENIAQTWQQ PEHYDLYIPA ITWHARFAYD KEKTDRYNER PWGGGFGLSR  60
   61 WDEKGNWHGL YAMAFKDSWN KWEPIAGYGW ESTWRPLADE NFHLGLGFTA GVTARDNWNY 120
  121 IPLPVLLPLA SVGYGPVTFQ MTYIPGTYNN GNVYFAWMRF QFLEHHHHHH

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	76.154902
Match:	1mm4A
Description:	Outer membrane enzyme PagP
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits